Detail Information

Basic Information:


  VIRBase ID:  

VHID00256600

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:           CKAP4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL112-5p CKAP4
miRBase
Accession/Entrez ID		 MIMAT0026552 10970
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CLIMP-63//CLIMP63//ERGIC-63//p63

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CKAP4
chr12:106639484(-) A-I      intronic
chr12:106639511(-) A-I      intronic
chr12:106640444(-) A-I      intronic
chr12:106640408(-) A-I      intronic
chr12:106639542(-) A-I      intronic
chr12:106639632(-) A-I      intronic
chr12:106638315(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CKAP4
chr12:106632670-106632671(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535
chr12:106632895-106632896(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:106632905-106632906(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:106632937-106632938(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106632947-106632948(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106632964-106632965(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633000-106633001(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633018-106633019(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633027-106633028(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633060-106633061(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633178-106633179(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr12:106633219-106633220(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr12:106633319-106633320(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633381-106633382(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633386-106633387(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633428-106633429(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633494-106633495(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr12:106633664-106633665(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr12:106633693-106633694(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633718-106633719(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633765-106633766(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633906-106633907(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633924-106633925(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633969-106633970(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106633992-106633993(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:106634059-106634060(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr12:106634064-106634065(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr12:106634099-106634100(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr12:106641201-106641202(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27773536//22575960
chr12:106641447-106641448(-) m6A CDS//intron       24209618//24981863
chr12:106641526-106641527(-) m1A CDS//intron       26863196//26863410
chr12:106641614-106641615(-) m6A CDS//intron       24209618//27773536//22575960
chr12:106647927-106647928(-) m6A 5'UTR//intron       27773536
chr12:106647952-106647953(-) m6A 5'UTR//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CKAP4
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL112-5p
Interactor2: CKAP4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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