Basic Information:

  VIRBase ID:  

VHID00256566

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          ARFRP1:  NR_051956     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	ARFRP1
miRBase Accession/Entrez ID	MIMAT0026552	10139
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARL18//ARP//Arp1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARFRP1	chr20:62330970-62330971(-) m6A 3'UTR//exon       24284625 chr20:62331049-62331050(-) m6A 3'UTR//exon       24284625//24981863 chr20:62331219-62331220(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27371828//22575960//22608085 chr20:62331244-62331245(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr20:62331301-62331302(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr20:62331429-62331430(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773536 chr20:62331440-62331441(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//27773536 chr20:62331453-62331454(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//27773536 chr20:62331506-62331507(-) m6A 3'UTR//exon//intron       24284625//25456834//27773536 chr20:62331657-62331658(-) m6A 3'UTR//exon       24284625 chr20:62331804-62331805(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863 chr20:62331912-62331913(-) m6A 3'UTR//exon//intron       24284625//27371828//27773536//22575960 chr20:62331918-62331919(-) m6A 3'UTR//exon//intron       24284625//27371828//27773536//22575960 chr20:62332100-62332101(-) m6A exon//intron       27773536 chr20:62333600-62333601(-) m6A exon//intron       27773535 chr20:62336254-62336255(-) m6A exon//intron       27773536 chr20:62336293-62336294(-) m6A exon//intron       27371828//27773536 chr20:62336423-62336424(-) m6A exon//intron       27371828//27773536 chr20:62337111-62337112(-) m6A exon//intron       27773535 chr20:62337119-62337120(-) m6A exon//intron       27773535 chr20:62337132-62337133(-) m6A exon//intron       27773535 chr20:62337137-62337138(-) m6A exon//intron       27773535 chr20:62337398-62337399(-) m6A exon//intron       - chr20:62337712-62337713(-) m6A CDS//exon       - chr20:62337742-62337743(-) Gm CDS//exon       - chr20:62337748-62337749(-) m6A CDS//exon       - chr20:62338004-62338005(-) m6A CDS//exon       24284625//27773535 chr20:62338052-62338053(-) m6A 5'UTR//CDS//exon       24284625//27773535//27371828//27773536 chr20:62338068-62338069(-) m6A 5'UTR//CDS//exon       24284625//27773535//27371828//27773536 chr20:62338089-62338090(-) m6A 5'UTR//CDS//exon       24284625//27773535//27371828 chr20:62338164-62338165(-) m6A exon//intron       24284625//27773535//27371828 chr20:62339167-62339168(-) m6A 5'UTR//intron       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARFRP1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: ARFRP1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg