Basic Information:

  VIRBase ID:  

VHID00256460

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          SOX2:  NM_003106     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	SOX2
miRBase Accession/Entrez ID	MIMAT0026552	6657
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ANOP3//MCOPS3

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOX2	chr3:181429812-181429813(+) m6A 5'UTR       24981863//22608085 chr3:181429818-181429819(+) m6A 5'UTR       24981863//22608085 chr3:181430196-181430197(+) m6A CDS       25456834//24981863 chr3:181430254-181430255(+) m6A CDS       24981863 chr3:181430263-181430264(+) m6A CDS       24981863 chr3:181430335-181430336(+) m6A CDS       24981863//22608085 chr3:181430387-181430388(+) m6A CDS       24981863//22608085 chr3:181430493-181430494(+) m6A CDS       24209618//24981863//22608085 chr3:181430608-181430609(+) m6A CDS       24209618//25456834//24981863//22608085 chr3:181430620-181430621(+) m6A CDS       24209618//25456834//24981863//22608085 chr3:181430674-181430675(+) m6A CDS       24209618//25456834//24981863//22608085 chr3:181430790-181430791(+) m6A CDS       24981863 chr3:181430953-181430954(+) m6A CDS       25456834//24981863//22608085 chr3:181430962-181430963(+) m6A CDS       25456834//24981863//22608085 chr3:181431002-181431003(+) m6A CDS       24209618//25456834//24981863//22608085 chr3:181431020-181431021(+) m6A CDS       24209618//25456834//24981863//22608085 chr3:181431109-181431110(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr3:181431116-181431117(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr3:181431186-181431187(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431200-181431201(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431274-181431275(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431303-181431304(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431323-181431324(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431345-181431346(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431360-181431361(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431380-181431381(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431412-181431413(+) m6A 3'UTR       25456834//24981863//22608085 chr3:181431449-181431450(+) m6A 3'UTR       24981863 chr3:181431596-181431597(+) m6A 3'UTR       24981863 chr3:181431698-181431699(+) m6A 3'UTR       24981863 chr3:181431739-181431740(+) m6A 3'UTR       24981863 chr3:181431796-181431797(+) m6A 3'UTR       24981863 chr3:181431837-181431838(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOX2	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: SOX2

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg