Basic Information:

  VIRBase ID:  

VHID00256428

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          PTPN3:  NR_026918     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	PTPN3
miRBase Accession/Entrez ID	MIMAT0026552	5774
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PTP-H1//PTPH1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PTPN3	chr9:112157904(-) A-I      intronic chr9:112157849(-) A-I      intronic chr9:112157252(-) A-I      intronic chr9:112157230(-) A-I      intronic chr9:112156887(-) A-I      intronic chr9:112155701(-) A-I      intronic chr9:112155022(-) A-I      ncRNA chr9:112156861(-) A-I      intronic chr9:112156854(-) A-I      intronic chr9:112160438(-) A-I      intronic chr9:112160392(-) A-I      intronic chr9:112160442(-) A-I      intronic chr9:112157832(-) A-I      intronic chr9:112157864(-) A-I      intronic chr9:112233475(-) A-I      intronic chr9:112233458(-) A-I      intronic chr9:112196162(-) A-I      intronic chr9:112196112(-) A-I      intronic chr9:112196106(-) A-I      intronic chr9:112196093(-) A-I      intronic chr9:112169635(-) A-I      intronic chr9:112168139(-) A-I      intronic chr9:112158345(-) A-I      intronic chr9:112158361(-) A-I      intronic chr9:112160357(-) A-I      intronic chr9:112160361(-) A-I      intronic chr9:112160430(-) A-I      intronic chr9:112162305(-) A-I      intronic chr9:112158423(-) A-I      intronic chr9:112158415(-) A-I      intronic chr9:112158414(-) A-I      intronic chr9:112157919(-) A-I      intronic chr9:112157879(-) A-I      intronic chr9:112139638(-) A-I      3'UTR chr9:112139669(-) A-I      3'UTR chr9:112139803(-) A-I      3'UTR chr9:112139850(-) A-I      3'UTR chr9:112162368(-) A-I      intronic chr9:112158312(-) A-I      intronic chr9:112205560(-) A-I      intronic chr9:112158315(-) A-I      intronic chr9:112221976(-) A-I      intronic chr9:112165236(-) A-I      intronic chr9:112158311(-) A-I      intronic chr9:112158265(-) A-I      intronic chr9:112158233(-) A-I      intronic chr9:112213465(-) A-I      5'UTR chr9:112213393(-) A-I      5'UTR chr9:112155840(-) A-I      intronic chr9:112157822(-) A-I      intronic chr9:112158393(-) A-I      intronic chr9:112142754(-) A-I      intronic chr9:112160309(-) A-I      intronic chr9:112167924(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PTPN3	chr9:112157864(-) A-I intron -    21960545 chr9:112158265(-) A-I intron -    21960545 chr9:112158269(-) A-I intron -    21960545 chr9:112158423(-) A-I intron -    21960545 chr9:112162310(-) A-I intron -    21960545 chr9:112169559(-) A-I intron -    21960545 chr9:112169591(-) A-I intron -    21960545 chr9:112213466(-) A-I intron -    21960545 chr9:112215100(-) A-I intron -    21960545 chr9:112215123(-) A-I intron -    21960545 chr9:112223173(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PTPN3	chr9:112140874-112140875(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22608085 chr9:112140884-112140885(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22608085 chr9:112140945-112140946(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22608085 chr9:112140974-112140975(-) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr9:112141039-112141040(-) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr9:112141140-112141141(-) m6A 3'UTR//exon       24284625//24981863 chr9:112141348-112141349(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr9:112141382-112141383(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr9:112141424-112141425(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr9:112141511-112141512(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr9:112141516-112141517(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr9:112141666-112141667(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:112141698-112141699(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:112141713-112141714(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:112141748-112141749(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:112141776-112141777(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:112141833-112141834(-) m6A 3'UTR       24284625//22608085 chr9:112168826-112168827(-) m6A CDS       27773535 chr9:112168836-112168837(-) m6A CDS       27773535 chr9:112168893-112168894(-) m6A CDS       27773535 chr9:112170613-112170614(-) m6A CDS       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PTPN3	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: PTPN3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg