Basic Information:

  VIRBase ID:  

VHID00254920

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-3p:  MIMAT0004755          GLYCTK:  NM_145262     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-3p	GLYCTK
miRBase Accession/Entrez ID	MIMAT0004755	132158
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HBeAgBP4A//HBEBP2//HBEBP4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GLYCTK	chr3:52322358(+) A-I      intronic chr3:52321632(+) A-I      intronic chr3:52322500(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GLYCTK	chr3:52324268-52324269(+) m6A exon//intron       25456834 chr3:52324654-52324655(+) m6A CDS//exon//intron       24284625 chr3:52325028-52325029(+) m6A CDS//exon       24284625 chr3:52325040-52325041(+) m6A CDS//exon       24284625 chr3:52325089-52325090(+) m6A CDS//exon       24284625 chr3:52325150-52325151(+) m6A exon//intron       24284625 chr3:52326309-52326310(+) m6A 3'UTR//CDS//exon//intron       24284625 chr3:52326425-52326426(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085 chr3:52326638-52326639(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//22608085 chr3:52326723-52326724(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr3:52326749-52326750(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr3:52326837-52326838(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr3:52326844-52326845(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr3:52327005-52327006(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr3:52327110-52327111(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US25-1-3p	Exosome K562 cells     24460325
	GLYCTK	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-3p
Interactor2: GLYCTK

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg