Detail Information

Basic Information:


  VIRBase ID:  

VHID00254904

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-3p:           ZNF496:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-1-3p ZNF496
miRBase
Accession/Entrez ID		 MIMAT0004755 84838
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - NIZP1//ZFP496//ZKSCAN17//ZSCAN49

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF496
chr1:247477715(-) A-I      intronic
chr1:247474499(-) A-I      ncRNA
chr1:247484415(-) A-I      intronic
chr1:247477694(-) A-I      intronic
chr1:247477718(-) A-I      intronic
chr1:247476010(-) A-I      ncRNA
chr1:247461668(-) A-I      3'UTR
chr1:247461685(-) A-I      3'UTR
chr1:247469590(-) A-I      intronic
chr1:247477726(-) A-I      intronic
chr1:247469563(-) A-I      intronic
chr1:247461712(-) A-I      3'UTR
chr1:247461708(-) A-I      3'UTR
chr1:247479940(-) A-I      intronic
chr1:247483125(-) A-I      intronic
chr1:247486967(-) A-I      intronic
chr1:247487154(-) A-I      intronic
chr1:247487166(-) A-I      intronic
chr1:247487199(-) A-I      intronic
chr1:247490507(-) A-I      intronic
chr1:247467721(-) A-I      intronic
chr1:247467736(-) A-I      intronic
chr1:247467739(-) A-I      intronic
chr1:247467741(-) A-I      intronic
chr1:247467759(-) A-I      intronic
chr1:247467766(-) A-I      intronic
chr1:247482493(-) A-I      intronic
chr1:247483139(-) A-I      intronic
chr1:247482541(-) A-I      intronic
chr1:247478177(-) A-I      intronic
chr1:247478121(-) A-I      intronic
chr1:247468551(-) A-I      intronic
chr1:247468539(-) A-I      intronic
chr1:247467798(-) A-I      intronic
chr1:247467782(-) A-I      intronic
chr1:247474510(-) A-I      ncRNA
chr1:247461738(-) A-I      3'UTR
chr1:247474618(-) A-I      ncRNA
chr1:247474664(-) A-I      ncRNA
chr1:247475956(-) A-I      ncRNA
chr1:247474517(-) A-I      ncRNA
chr1:247474532(-) A-I      ncRNA
chr1:247461696(-) A-I      3'UTR
chr1:247474481(-) A-I      ncRNA
chr1:247468490(-) A-I      intronic
chr1:247478257(-) A-I      intronic
chr1:247482540(-) A-I      intronic
chr1:247478249(-) A-I      intronic
chr1:247468491(-) A-I      intronic
chr1:247468541(-) A-I      intronic
chr1:247478325(-) A-I      intronic
chr1:247477558(-) A-I      intronic
chr1:247477397(-) A-I      intronic
chr1:247478332(-) A-I      intronic
chr1:247461889(-) A-I      3'UTR
chr1:247461705(-) A-I      3'UTR
chr1:247468530(-) A-I      intronic
chr1:247483113(-) A-I      intronic
chr1:247478290(-) A-I      intronic
chr1:247474536(-) A-I      ncRNA
chr1:247474523(-) A-I      ncRNA
chr1:247475829(-) A-I      ncRNA
chr1:247475798(-) A-I      ncRNA
chr1:247474602(-) A-I      ncRNA
chr1:247475944(-) A-I      ncRNA
chr1:247474619(-) A-I      ncRNA
chr1:247474580(-) A-I      ncRNA
chr1:247474615(-) A-I      ncRNA
chr1:247477072(-) A-I      ncRNA
chr1:247475876(-) A-I      ncRNA
chr1:247477071(-) A-I      ncRNA
chr1:247474578(-) A-I      ncRNA
chr1:247475979(-) A-I      ncRNA
chr1:247475859(-) A-I      ncRNA
chr1:247474650(-) A-I      ncRNA
chr1:247475805(-) A-I      ncRNA
chr1:247474645(-) A-I      ncRNA
chr1:247474545(-) A-I      ncRNA
chr1:247474498(-) A-I      ncRNA
chr1:247475804(-) A-I      ncRNA
chr1:247474590(-) A-I      ncRNA
chr1:247475847(-) A-I      ncRNA
chr1:247475439(-) A-I      ncRNA
chr1:247482412(-) A-I      intronic
chr1:247484395(-) A-I      intronic
chr1:247482354(-) A-I      intronic
chr1:247461872(-) A-I      3'UTR
chr1:247484391(-) A-I      intronic
chr1:247468514(-) A-I      intronic
chr1:247489072(-) A-I      intronic
chr1:247483142(-) A-I      intronic
chr1:247477585(-) A-I      intronic
chr1:247478189(-) A-I      intronic
chr1:247468546(-) A-I      intronic
chr1:247477499(-) A-I      intronic
chr1:247482392(-) A-I      intronic
chr1:247484343(-) A-I      intronic
chr1:247484290(-) A-I      intronic
chr1:247483168(-) A-I      intronic
chr1:247477538(-) A-I      intronic
chr1:247487007(-) A-I      intronic
chr1:247468520(-) A-I      intronic
chr1:247485463(-) A-I      intronic
chr1:247482489(-) A-I      intronic
chr1:247477459(-) A-I      intronic
chr1:247484354(-) A-I      intronic
chr1:247478304(-) A-I      intronic
chr1:247469215(-) A-I      intronic
chr1:247478247(-) A-I      intronic
chr1:247477638(-) A-I      intronic
chr1:247482355(-) A-I      intronic
chr1:247478173(-) A-I      intronic
chr1:247478134(-) A-I      intronic
chr1:247484270(-) A-I      intronic
chr1:247483203(-) A-I      intronic
chr1:247477541(-) A-I      intronic
chr1:247469164(-) A-I      intronic
chr1:247469560(-) A-I      intronic
chr1:247478116(-) A-I      intronic
chr1:247482381(-) A-I      intronic
chr1:247478187(-) A-I      intronic
chr1:247478195(-) A-I      intronic
chr1:247481475(-) A-I      intronic
chr1:247484315(-) A-I      intronic
chr1:247478248(-) A-I      intronic
chr1:247478216(-) A-I      intronic
chr1:247488912(-) A-I      intronic
chr1:247478303(-) A-I      intronic
chr1:247482422(-) A-I      intronic
chr1:247483103(-) A-I      intronic
chr1:247490616(-) A-I      intronic
chr1:247477489(-) A-I      intronic
chr1:247482522(-) A-I      intronic
chr1:247482448(-) A-I      intronic
chr1:247483101(-) A-I      intronic
chr1:247468564(-) A-I      intronic
chr1:247482424(-) A-I      intronic
chr1:247469604(-) A-I      intronic
chr1:247478106(-) A-I      intronic
chr1:247469216(-) A-I      intronic
chr1:247485585(-) A-I      intronic
chr1:247469636(-) A-I      intronic
chr1:247478137(-) A-I      intronic
chr1:247478200(-) A-I      intronic
chr1:247482581(-) A-I      intronic
chr1:247482565(-) A-I      intronic
chr1:247469583(-) A-I      intronic
chr1:247478057(-) A-I      intronic
chr1:247482404(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF496
chr1:247468546(-) A-I intron -    21960545
chr1:247477072(-) A-I intron -    21960545
chr1:247477076(-) A-I intron -    21960545
chr1:247477763(-) A-I intron -    21960545
chr1:247478173(-) A-I intron -    21960545
chr1:247478200(-) A-I intron -    21960545
chr1:247478332(-) A-I intron -    21960545
chr1:247483103(-) A-I intron -    21960545
chr1:247488797(-) A-I intron -    21960545
chr1:247488800(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF496
chr1:247460809-247460810(-) m6A 3'UTR//exon       24981863
chr1:247461058-247461059(-) m6A 3'UTR//exon       24284625//27371828
chr1:247461652-247461653(-) m6A 3'UTR//exon       24284625
chr1:247461815-247461816(-) m6A 3'UTR//exon       24284625
chr1:247461870-247461871(-) m6A 3'UTR//exon       24284625
chr1:247461921-247461922(-) m6A 3'UTR//exon       24284625
chr1:247462106-247462107(-) m6A 3'UTR//exon       24284625//24981863
chr1:247462127-247462128(-) m6A 3'UTR//exon       24284625//24209618//24981863
chr1:247462144-247462145(-) m6A 3'UTR//exon       24284625//24209618//24981863
chr1:247462169-247462170(-) m6A 3'UTR//exon       24284625//24209618//24981863
chr1:247462317-247462318(-) m6A 3'UTR//exon       24284625//24209618//24981863
chr1:247462361-247462362(-) m6A 3'UTR//exon       24284625//24981863
chr1:247462437-247462438(-) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr1:247462462-247462463(-) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr1:247463146-247463147(-) m6A 3'UTR//exon       -
chr1:247463281-247463282(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr1:247463325-247463326(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:247463353-247463354(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr1:247463458-247463459(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:247463502-247463503(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:247463538-247463539(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:247463565-247463566(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:247463742-247463743(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:247463830-247463831(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:247463890-247463891(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:247463941-247463942(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:247464027-247464028(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:247464067-247464068(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr1:247464118-247464119(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr1:247464160-247464161(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:247464238-247464239(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr1:247464355-247464356(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:247464383-247464384(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:247464493-247464494(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:247464550-247464551(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:247471787-247471788(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:247471889-247471890(-) m6A CDS//exon       24284625//27773535
chr1:247471923-247471924(-) m6A exon//intron       24284625//27773535
chr1:247473111-247473112(-) m6A exon//intron       -
chr1:247473136-247473137(-) m6A exon//intron       -
chr1:247473173-247473174(-) m6A exon//intron       -
chr1:247486489-247486490(-) m6A CDS       -
chr1:247491989-247491990(-) m6A CDS//exon       24284625//24209618
chr1:247492012-247492013(-) m6A CDS//exon       24284625//24209618
chr1:247492064-247492065(-) m6A CDS//exon       24284625//24209618//27371828//27773536
chr1:247492115-247492116(-) m6A CDS//exon       24284625//24209618//27371828//27773536
chr1:247492127-247492128(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960
chr1:247492151-247492152(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960
chr1:247492502-247492503(-) m6A CDS//exon       24284625//24209618//25456834//27371828//27773536//22575960
chr1:247492686-247492687(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536
chr1:247492797-247492798(-) m6A CDS//exon       24284625//27371828
chr1:247493281-247493282(-) m6A 5'UTR//exon       24284625//27773535
chr1:247493353-247493354(-) m6A 5'UTR//exon       24284625//27773535
chr1:247494792-247494793(-) m6A 5'UTR//exon       24284625//27773536
chr1:247494853-247494854(-) m6A 5'UTR//exon       24284625//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US25-1-3p
Exosome K562 cells     24460325
ZNF496
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-1-3p
Interactor2: ZNF496

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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