Detail Information

Basic Information:


  VIRBase ID:  

VHID00252068

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL36-3p:           COX5A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL36-3p COX5A
miRBase
Accession/Entrez ID		 MIMAT0004754 9377
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - COX//COX-VA//MC4DN20//VA

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR COX5A
chr15:75227514(-) A-I      intronic
chr15:75227536(-) A-I      intronic
chr15:75218784(-) A-I      intronic
chr15:75219750(-) A-I      intronic
chr15:75218789(-) A-I      intronic
chr15:75219745(-) A-I      intronic
chr15:75219694(-) A-I      intronic
chr15:75218768(-) A-I      intronic
chr15:75227554(-) A-I      intronic
chr15:75223638(-) A-I      intronic
chr15:75223598(-) A-I      intronic
chr15:75214577(-) A-I      intronic
chr15:75216364(-) A-I      intronic
chr15:75216355(-) A-I      intronic
chr15:75213176(-) A-I      intronic
chr15:75213949(-) A-I      intronic
chr15:75213971(-) A-I      intronic
chr15:75214312(-) A-I      intronic
chr15:75214355(-) A-I      intronic
chr15:75214363(-) A-I      intronic
chr15:75214493(-) A-I      intronic
chr15:75224162(-) A-I      intronic
chr15:75215042(-) A-I      intronic
chr15:75215054(-) A-I      intronic
chr15:75215099(-) A-I      intronic
chr15:75215103(-) A-I      intronic
chr15:75223676(-) A-I      intronic
chr15:75223698(-) A-I      intronic
chr15:75224006(-) A-I      intronic
chr15:75224054(-) A-I      intronic
chr15:75215625(-) A-I      intronic
chr15:75215616(-) A-I      intronic
chr15:75224167(-) A-I      intronic
chr15:75225153(-) A-I      intronic
chr15:75216712(-) A-I      intronic
chr15:75225154(-) A-I      intronic
chr15:75225205(-) A-I      intronic
chr15:75225221(-) A-I      intronic
chr15:75226454(-) A-I      intronic
chr15:75226568(-) A-I      intronic
chr15:75226836(-) A-I      intronic
chr15:75226844(-) A-I      intronic
chr15:75226867(-) A-I      intronic
chr15:75227511(-) A-I      intronic
chr15:75227512(-) A-I      intronic
chr15:75227549(-) A-I      intronic
chr15:75227625(-) A-I      intronic
chr15:75227890(-) A-I      intronic
chr15:75219964(-) A-I      intronic
chr15:75215139(-) A-I      intronic
chr15:75215135(-) A-I      intronic
chr15:75219965(-) A-I      intronic
chr15:75220044(-) A-I      intronic
chr15:75224055(-) A-I      intronic
chr15:75220074(-) A-I      intronic
chr15:75222996(-) A-I      intronic
chr15:75223607(-) A-I      intronic
chr15:75219721(-) A-I      intronic
chr15:75219731(-) A-I      intronic
chr15:75216636(-) A-I      intronic
chr15:75216695(-) A-I      intronic
chr15:75219697(-) A-I      intronic
chr15:75219603(-) A-I      intronic
chr15:75217620(-) A-I      intronic
chr15:75217461(-) A-I      intronic
chr15:75219783(-) A-I      intronic
chr15:75223616(-) A-I      intronic
chr15:75223650(-) A-I      intronic
chr15:75216666(-) A-I      intronic
chr15:75216386(-) A-I      intronic
chr15:75223639(-) A-I      intronic
chr15:75213075(-) A-I      intronic
chr15:75218744(-) A-I      intronic
chr15:75217633(-) A-I      intronic
chr15:75213098(-) A-I      intronic
chr15:75216635(-) A-I      intronic
chr15:75218286(-) A-I      intronic
chr15:75227832(-) A-I      intronic
chr15:75228510(-) A-I      intronic
chr15:75214969(-) A-I      intronic
chr15:75220001(-) A-I      intronic
chr15:75214664(-) A-I      intronic
chr15:75217845(-) A-I      intronic
chr15:75217541(-) A-I      intronic
chr15:75225309(-) A-I      intronic
chr15:75223295(-) A-I      intronic
chr15:75216766(-) A-I      intronic
chr15:75216383(-) A-I      intronic
chr15:75220094(-) A-I      intronic
chr15:75219591(-) A-I      intronic
chr15:75213076(-) A-I      intronic
chr15:75225176(-) A-I      intronic
chr15:75225655(-) A-I      intronic
chr15:75217808(-) A-I      intronic
chr15:75214679(-) A-I      intronic
chr15:75213207(-) A-I      intronic
chr15:75228163(-) A-I      intronic
chr15:75217827(-) A-I      intronic
chr15:75219614(-) A-I      intronic
chr15:75213271(-) A-I      intronic
chr15:75216637(-) A-I      intronic
chr15:75213987(-) A-I      intronic
chr15:75223597(-) A-I      intronic
chr15:75215562(-) A-I      intronic
chr15:75219951(-) A-I      intronic
chr15:75214905(-) A-I      intronic
chr15:75220030(-) A-I      intronic
chr15:75216459(-) A-I      intronic
chr15:75216810(-) A-I      intronic
chr15:75214311(-) A-I      intronic
chr15:75228212(-) A-I      intronic
chr15:75220013(-) A-I      intronic
chr15:75226571(-) A-I      intronic
chr15:75222994(-) A-I      intronic
chr15:75220082(-) A-I      intronic
chr15:75216399(-) A-I      intronic
chr15:75216756(-) A-I      intronic
chr15:75213102(-) A-I      intronic
chr15:75214604(-) A-I      intronic
chr15:75215510(-) A-I      intronic
chr15:75219578(-) A-I      intronic
chr15:75222906(-) A-I      intronic
chr15:75215598(-) A-I      intronic
chr15:75226584(-) A-I      intronic
chr15:75213068(-) A-I      intronic
chr15:75215704(-) A-I      intronic
chr15:75227574(-) A-I      intronic
chr15:75214985(-) A-I      intronic
chr15:75215186(-) A-I      intronic
chr15:75214946(-) A-I      intronic
chr15:75219950(-) A-I      intronic
chr15:75222921(-) A-I      intronic
chr15:75215211(-) A-I      intronic
chr15:75225212(-) A-I      intronic
chr15:75213156(-) A-I      intronic
chr15:75214687(-) A-I      intronic
chr15:75214357(-) A-I      intronic
chr15:75214548(-) A-I      intronic
chr15:75215189(-) A-I      intronic
chr15:75215523(-) A-I      intronic
chr15:75214947(-) A-I      intronic
chr15:75222121(-) A-I      intronic
chr15:75218304(-) A-I      intronic
chr15:75213279(-) A-I      intronic
chr15:75223730(-) A-I      intronic
chr15:75227541(-) A-I      intronic
chr15:75215171(-) A-I      intronic
chr15:75214886(-) A-I      intronic
chr15:75219685(-) A-I      intronic
chr15:75217955(-) A-I      intronic
chr15:75214483(-) A-I      intronic
chr15:75228113(-) A-I      intronic
chr15:75215145(-) A-I      intronic
chr15:75223115(-) A-I      intronic
chr15:75213978(-) A-I      intronic
chr15:75225103(-) A-I      intronic
chr15:75215287(-) A-I      intronic
chr15:75213310(-) A-I      intronic
chr15:75223836(-) A-I      intronic
chr15:75217826(-) A-I      intronic
chr15:75215092(-) A-I      intronic
chr15:75215263(-) A-I      intronic
chr15:75218790(-) A-I      intronic
chr15:75214626(-) A-I      intronic
chr15:75213074(-) A-I      intronic
chr15:75215175(-) A-I      intronic
chr15:75215074(-) A-I      intronic
chr15:75215269(-) A-I      intronic
chr15:75225706(-) A-I      intronic
chr15:75225646(-) A-I      intronic
chr15:75215644(-) A-I      intronic
chr15:75227728(-) A-I      intronic
chr15:75228082(-) A-I      intronic
chr15:75224780(-) A-I      intronic
chr15:75227553(-) A-I      intronic
chr15:75218720(-) A-I      intronic
chr15:75217419(-) A-I      intronic
chr15:75223725(-) A-I      intronic
chr15:75217554(-) A-I      intronic
chr15:75225202(-) A-I      intronic
chr15:75214578(-) A-I      intronic
chr15:75220056(-) A-I      intronic
chr15:75225716(-) A-I      intronic
chr15:75217558(-) A-I      intronic
chr15:75222019(-) A-I      intronic
chr15:75225633(-) A-I      intronic
chr15:75213108(-) A-I      intronic
chr15:75214968(-) A-I      intronic
chr15:75215548(-) A-I      intronic
chr15:75227727(-) A-I      intronic
chr15:75214484(-) A-I      intronic
chr15:75225265(-) A-I      intronic
chr15:75224137(-) A-I      intronic
chr15:75220031(-) A-I      intronic
chr15:75219682(-) A-I      intronic
chr15:75223694(-) A-I      intronic
chr15:75215231(-) A-I      intronic
chr15:75215285(-) A-I      intronic
chr15:75229082(-) A-I      intronic
chr15:75227715(-) A-I      intronic
chr15:75222988(-) A-I      intronic
chr15:75215553(-) A-I      intronic
chr15:75218216(-) A-I      intronic
chr15:75213170(-) A-I      intronic
chr15:75215122(-) A-I      intronic
chr15:75217581(-) A-I      intronic
chr15:75225328(-) A-I      intronic
chr15:75213056(-) A-I      intronic
chr15:75213237(-) A-I      intronic
chr15:75217641(-) A-I      intronic
chr15:75215617(-) A-I      intronic
chr15:75214939(-) A-I      intronic
chr15:75227579(-) A-I      intronic
chr15:75213062(-) A-I      intronic
chr15:75214285(-) A-I      intronic
chr15:75214669(-) A-I      intronic
chr15:75215260(-) A-I      intronic
chr15:75215708(-) A-I      intronic
chr15:75218776(-) A-I      intronic
chr15:75215230(-) A-I      intronic
chr15:75216264(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED COX5A
chr15:75214311(-) A-G intron -    22484847
chr15:75217633(-) A-G intron -    22484847
chr15:75220030(-) A-G intron -    22484847
chr15:75220082(-) A-G intron -    22484847
chr15:75222994(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase COX5A
chr15:75216018-75216019(-) m6A CDS//intron       22575960
chr15:75216042-75216043(-) m6A CDS//intron       22575960
chr15:75216057-75216058(-) m6A CDS//intron       22575960
chr15:75216063-75216064(-) m6A CDS//intron       22575960
chr15:75216099-75216100(-) m6A CDS//intron       22575960
chr15:75230031-75230032(-) m6A 5'UTR//intron       27773535
chr15:75230090-75230091(-) m6A 5'UTR//intron       22575960
chr15:75230273-75230274(-) m6A CDS       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate COX5A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL36-3p
Interactor2: COX5A

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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