Basic Information:

  VIRBase ID:  

VHID00248168

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL70-3p:  MIMAT0003343          GTPBP2:  NM_019096     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL70-3p	GTPBP2
miRBase Accession/Entrez ID	MIMAT0003343	54676
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	JABELS

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GTPBP2	chr6:43590898(-) G-T intron -    22484847 chr6:43590986(-) C-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GTPBP2	chr6:43588338-43588339(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27773535 chr6:43588377-43588378(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr6:43588428-43588429(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085 chr6:43588480-43588481(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535 chr6:43588540-43588541(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535 chr6:43588823-43588824(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr6:43588892-43588893(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr6:43589024-43589025(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr6:43589097-43589098(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr6:43589151-43589152(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr6:43589190-43589191(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr6:43589334-43589335(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr6:43589349-43589350(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr6:43589446-43589447(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr6:43589476-43589477(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr6:43589514-43589515(-) m6A 3'UTR//CDS//exon       24284625//25456834//27773535//27371828//22608085 chr6:43589525-43589526(-) m6A 3'UTR//CDS//exon       24284625//25456834//27773535//27371828//22608085 chr6:43589569-43589570(-) m6A 3'UTR//intron       24981863//27773535//27371828 chr6:43589640-43589641(-) m6A CDS//intron       24981863//27773535 chr6:43589667-43589668(-) m6A CDS//intron       24981863//27773535 chr6:43589678-43589679(-) m6A CDS//intron       24981863//27773535 chr6:43589729-43589730(-) m6A CDS//intron       27773535 chr6:43591214-43591215(-) m6A exon//intron       27773535 chr6:43591287-43591288(-) m6A exon//intron       27773535 chr6:43591696-43591697(-) m6A CDS//exon       24284625//27773535 chr6:43591757-43591758(-) m6A CDS//exon       24284625//27773535 chr6:43592361-43592362(-) m6A CDS//exon       24284625//27773535 chr6:43592376-43592377(-) m6A CDS//exon       24284625//27773535 chr6:43592449-43592450(-) m6A CDS//exon       24284625//27773535 chr6:43592774-43592775(-) m6A CDS//exon       24284625//24209618//27773535 chr6:43592966-43592967(-) m6A exon//intron       24981863//27773535//22608085 chr6:43592973-43592974(-) m6A exon//intron       24981863//27773535//22608085 chr6:43593009-43593010(-) m6A exon//intron       24981863//27773535//22608085 chr6:43593035-43593036(-) m6A exon//intron       24981863//27773535//27371828//22608085 chr6:43593065-43593066(-) m6A exon//intron       24284625//24981863//27773535//27371828//22608085 chr6:43593080-43593081(-) m6A exon//intron       24284625//24981863//27773535//27371828 chr6:43593146-43593147(-) m6A CDS//exon       27773535//27371828//27773536 chr6:43593211-43593212(-) m6A CDS//exon       27773535//27773536 chr6:43593259-43593260(-) m6A CDS//exon       27773535//27773536 chr6:43593289-43593290(-) m6A CDS//exon       27773535//27773536 chr6:43593589-43593590(-) m6A CDS//exon       24209618//27773535//27371828//22575960 chr6:43593984-43593985(-) m6A CDS//exon       24284625//24209618//27773535//27371828//22575960 chr6:43594037-43594038(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960 chr6:43594671-43594672(-) m6A 5'UTR//CDS//exon       24284625//24209618//27773535 chr6:43596756-43596757(-) m6A CDS       25456834//24981863//27371828//27773536 chr6:43596769-43596770(-) m1A CDS       26863196//26863410 chr6:43596829-43596830(-) m6A CDS       25456834//24981863//27773535//27371828//27773536 chr6:43596885-43596886(-) Y CDS       26075521 chr6:43596894-43596895(-) m6A CDS       25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GTPBP2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-UL70-3p	l-685,458       5479543 Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL70-3p
Interactor2: GTPBP2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg