Detail Information

Basic Information:


  VIRBase ID:  

VHID00247248

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL70-3p:           CGREF1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL70-3p CGREF1
miRBase
Accession/Entrez ID		 MIMAT0003343 10669
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CGR11

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CGREF1
chr2:27335082(-) A-I      intronic
chr2:27335098(-) A-I      intronic
chr2:27335097(-) A-I      intronic
chr2:27337849(-) A-I      intronic
chr2:27335103(-) A-I      intronic
chr2:27335037(-) A-I      intronic
chr2:27335036(-) A-I      intronic
chr2:27335021(-) A-I      intronic
chr2:27332609(-) A-I      intronic
chr2:27332148(-) A-I      intronic
chr2:27330204(-) A-I      intronic
chr2:27335087(-) A-I      intronic
chr2:27337876(-) A-I      intronic
chr2:27337867(-) A-I      intronic
chr2:27337859(-) A-I      intronic
chr2:27335142(-) A-I      intronic
chr2:27340051(-) A-I      intronic
chr2:27330296(-) A-I      intronic
chr2:27340021(-) A-I      intronic
chr2:27326788(-) A-I      intronic
chr2:27332053(-) A-I      intronic
chr2:27326765(-) A-I      intronic
chr2:27332128(-) A-I      intronic
chr2:27332072(-) A-I      intronic
chr2:27336959(-) A-I      intronic
chr2:27332641(-) A-I      intronic
chr2:27329649(-) A-I      intronic
chr2:27335108(-) A-I      intronic
chr2:27326596(-) A-I      intronic
chr2:27339859(-) A-I      intronic
chr2:27339543(-) A-I      intronic
chr2:27334945(-) A-I      intronic
chr2:27340644(-) A-I      intronic
chr2:27335141(-) A-I      intronic
chr2:27329723(-) A-I      intronic
chr2:27337878(-) A-I      intronic
chr2:27332591(-) A-I      intronic
chr2:27337140(-) A-I      intronic
chr2:27339050(-) A-I      intronic
chr2:27331848(-) A-I      intronic
chr2:27329561(-) A-I      intronic
chr2:27333158(-) A-I      intronic
chr2:27335140(-) A-I      intronic
chr2:27339014(-) A-I      intronic
chr2:27332209(-) A-I      intronic
chr2:27330260(-) A-I      intronic
chr2:27338876(-) A-I      intronic
chr2:27326608(-) A-I      intronic
chr2:27338825(-) A-I      intronic
chr2:27330228(-) A-I      intronic
chr2:27334973(-) A-I      intronic
chr2:27326729(-) A-I      intronic
chr2:27338863(-) A-I      intronic
chr2:27332069(-) A-I      intronic
chr2:27330316(-) A-I      intronic
chr2:27333223(-) A-I      intronic
chr2:27334903(-) A-I      intronic
chr2:27336995(-) A-I      intronic
chr2:27337820(-) A-I      intronic
chr2:27333210(-) A-I      intronic
chr2:27333186(-) A-I      intronic
chr2:27340043(-) A-I      intronic
chr2:27335013(-) A-I      intronic
chr2:27330261(-) A-I      intronic
chr2:27333175(-) A-I      intronic
chr2:27333224(-) A-I      intronic
chr2:27326727(-) A-I      intronic
chr2:27326351(-) A-I      intronic
chr2:27337001(-) A-I      intronic
chr2:27330546(-) A-I      intronic
chr2:27335130(-) A-I      intronic
chr2:27326378(-) A-I      intronic
chr2:27339949(-) A-I      intronic
chr2:27330287(-) A-I      intronic
chr2:27335033(-) A-I      intronic
chr2:27326405(-) A-I      intronic
chr2:27331847(-) A-I      intronic
chr2:27329759(-) A-I      intronic
chr2:27331799(-) A-I      intronic
chr2:27329775(-) A-I      intronic
chr2:27340016(-) A-I      intronic
chr2:27333140(-) A-I      intronic
chr2:27335045(-) A-I      intronic
chr2:27339535(-) A-I      intronic
chr2:27326659(-) A-I      intronic
chr2:27336960(-) A-I      intronic
chr2:27336984(-) A-I      intronic
chr2:27338838(-) A-I      intronic
chr2:27338987(-) A-I      intronic
chr2:27326264(-) A-I      intronic
chr2:27329623(-) A-I      intronic
chr2:27339935(-) A-I      intronic
chr2:27339130(-) A-I      intronic
chr2:27339138(-) A-I      intronic
chr2:27337858(-) A-I      intronic
chr2:27337889(-) A-I      intronic
chr2:27337133(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CGREF1
chr2:27324054-27324055(-) m6A 3'UTR//intron       24209618
chr2:27324060-27324061(-) m6A 3'UTR//intron       24209618//25456834//24981863
chr2:27324099-27324100(-) m6A 3'UTR//intron       24209618//25456834//24981863
chr2:27324196-27324197(-) m6A CDS//intron       24209618//25456834//24981863//27371828
chr2:27324212-27324213(-) m6A CDS//intron       24209618//25456834//24981863//27371828
chr2:27324225-27324226(-) m6A CDS//intron       24209618//25456834//24981863//27371828
chr2:27324529-27324530(-) m1A CDS//intron       26863196
chr2:27324557-27324558(-) m6A CDS//intron       24981863//27773535
chr2:27324564-27324565(-) m6A CDS//intron       24981863//27773535
chr2:27333556-27333557(-) m6A 5'UTR//intron       24981863
chr2:27333571-27333572(-) m6A 5'UTR//intron       24981863
chr2:27333578-27333579(-) m6A 5'UTR//intron       24981863
chr2:27333630-27333631(-) m6A 5'UTR//intron       24981863
chr2:27333647-27333648(-) m6A 5'UTR//intron       24981863//27773535
chr2:27333658-27333659(-) m6A 5'UTR//intron       24981863//27773535
chr2:27333670-27333671(-) m6A 5'UTR//intron       24981863//27773535
chr2:27333687-27333688(-) m6A 5'UTR//intron       24981863//27773535
chr2:27333705-27333706(-) m6A 5'UTR//intron       24981863//27773535
chr2:27333712-27333713(-) m6A 5'UTR//intron       24981863//27773535
chr2:27333788-27333789(-) m6A 5'UTR//intron       24209618
chr2:27333806-27333807(-) m6A 5'UTR//intron       24209618
chr2:27341681-27341682(-) m6A 5'UTR//intron       24209618
chr2:27341741-27341742(-) m6A 5'UTR       24209618
chr2:27341874-27341875(-) m6A 5'UTR       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CGREF1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-UL70-3p
l-685,458       5479543
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL70-3p
Interactor2: CGREF1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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