Detail Information

Basic Information:


  VIRBase ID:  

VHID00246986

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL70-3p:           ZSCAN12:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL70-3p ZSCAN12
miRBase
Accession/Entrez ID		 MIMAT0003343 9753
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - dJ29K1.2//ZFP96//ZNF29K1//ZNF305//ZNF96

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZSCAN12
chr6:28363962(-) A-I      intronic
chr6:28364632(-) A-I      intronic
chr6:28363967(-) A-I      intronic
chr6:28363918(-) A-I      intronic
chr6:28361463(-) A-I      intronic
chr6:28361363(-) A-I      intronic
chr6:28364628(-) A-I      intronic
chr6:28361474(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZSCAN12
chr6:28347211(-) A-I exon 3'UTR    21960545
chr6:28362783(-) A-G intron -    22484847
chr6:28362804(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZSCAN12
chr6:28346960-28346961(-) m6A 3'UTR       -
chr6:28346997-28346998(-) m6A 3'UTR       -
chr6:28347777-28347778(-) m6A 3'UTR       27773535
chr6:28347865-28347866(-) m6A 3'UTR       27773535//22608085
chr6:28347973-28347974(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr6:28347984-28347985(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr6:28347994-28347995(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr6:28348059-28348060(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr6:28348103-28348104(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr6:28348159-28348160(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28348191-28348192(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28348211-28348212(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28348234-28348235(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28348245-28348246(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28348290-28348291(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28348386-28348387(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr6:28348408-28348409(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr6:28348551-28348552(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr6:28348597-28348598(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:28348602-28348603(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:28348607-28348608(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:28348620-28348621(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:28348627-28348628(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:28348685-28348686(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr6:28348768-28348769(-) m6A 3'UTR//intron       27773535
chr6:28348825-28348826(-) m6A 3'UTR//intron       27773535
chr6:28349887-28349888(-) m6A 3'UTR//intron       22608085
chr6:28350004-28350005(-) m6A 3'UTR       24284625//24209618//25456834//27773535//22608085
chr6:28350037-28350038(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:28350067-28350068(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28350088-28350089(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28350127-28350128(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28350148-28350149(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28350184-28350185(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28350227-28350228(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr6:28350340-28350341(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28350378-28350379(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28358377-28358378(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28358524-28358525(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:28358581-28358582(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:28358608-28358609(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:28358622-28358623(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:28358665-28358666(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:28358918-28358919(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr6:28358998-28358999(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr6:28359016-28359017(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28359082-28359083(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28359123-28359124(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr6:28359166-28359167(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr6:28359193-28359194(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28359277-28359278(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr6:28359293-28359294(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr6:28359334-28359335(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr6:28359382-28359383(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28359390-28359391(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28359441-28359442(-) m6A CDS       22608085
chr6:28359454-28359455(-) m6A CDS       22608085
chr6:28359504-28359505(-) m6A CDS       27773535
chr6:28360700-28360701(-) m6A CDS       27773535
chr6:28360754-28360755(-) m6A CDS       27773535//22608085
chr6:28360802-28360803(-) m6A CDS       24284625//25456834//27773535//27773536//22608085
chr6:28365792-28365793(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:28365801-28365802(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:28365933-28365934(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:28365947-28365948(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:28365975-28365976(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:28366013-28366014(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:28366032-28366033(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28366072-28366073(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28366084-28366085(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:28366095-28366096(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr6:28366124-28366125(-) Am CDS       -
chr6:28366137-28366138(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28366147-28366148(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:28366207-28366208(-) m6A 5'UTR       24284625//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZSCAN12
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-UL70-3p
l-685,458       5479543
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL70-3p
Interactor2: ZSCAN12

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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