Detail Information

Basic Information:


  VIRBase ID:  

VHID00245636

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL70-3p:           HSPG2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL70-3p HSPG2
miRBase
Accession/Entrez ID		 MIMAT0003343 3339
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - HSPG//PLC//PRCAN//SJA//SJS//SJS1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HSPG2
chr1:22152350(-) A-I      intronic
chr1:22234266(-) A-I      intronic
chr1:22234206(-) A-I      intronic
chr1:22246667(-) A-I      intronic
chr1:22246664(-) A-I      intronic
chr1:22251615(-) A-I      intronic
chr1:22251610(-) A-I      intronic
chr1:22153118(-) A-I      intronic
chr1:22251608(-) A-I      intronic
chr1:22245702(-) A-I      intronic
chr1:22250781(-) A-I      intronic
chr1:22255058(-) A-I      intronic
chr1:22153535(-) A-I      intronic
chr1:22253153(-) A-I      intronic
chr1:22172046(-) A-I      intronic
chr1:22208336(-) A-I      intronic
chr1:22208409(-) A-I      intronic
chr1:22250824(-) A-I      intronic
chr1:22234151(-) A-I      intronic
chr1:22250831(-) A-I      intronic
chr1:22253054(-) A-I      intronic
chr1:22252493(-) A-I      intronic
chr1:22252491(-) A-I      intronic
chr1:22162505(-) A-I      intronic
chr1:22251653(-) A-I      intronic
chr1:22251627(-) A-I      intronic
chr1:22250725(-) A-I      intronic
chr1:22250705(-) A-I      intronic
chr1:22259707(-) A-I      intronic
chr1:22259618(-) A-I      intronic
chr1:22259530(-) A-I      intronic
chr1:22257245(-) A-I      intronic
chr1:22257049(-) A-I      intronic
chr1:22246650(-) A-I      intronic
chr1:22252490(-) A-I      intronic
chr1:22252439(-) A-I      intronic
chr1:22246651(-) A-I      intronic
chr1:22246627(-) A-I      intronic
chr1:22246579(-) A-I      intronic
chr1:22245716(-) A-I      intronic
chr1:22253122(-) A-I      intronic
chr1:22242363(-) A-I      intronic
chr1:22232421(-) A-I      intronic
chr1:22209908(-) A-I      intronic
chr1:22261227(-) A-I      intronic
chr1:22171576(-) A-I      intronic
chr1:22164028(-) A-I      intronic
chr1:22164372(-) A-I      intronic
chr1:22208279(-) A-I      intronic
chr1:22208219(-) A-I      intronic
chr1:22164384(-) A-I      intronic
chr1:22253166(-) A-I      intronic
chr1:22257145(-) A-I      intronic
chr1:22164385(-) A-I      intronic
chr1:22164394(-) A-I      intronic
chr1:22164399(-) A-I      intronic
chr1:22164547(-) A-I      intronic
chr1:22164615(-) A-I      intronic
chr1:22171986(-) A-I      intronic
chr1:22164572(-) A-I      intronic
chr1:22253080(-) A-I      intronic
chr1:22163977(-) A-I      intronic
chr1:22164620(-) A-I      intronic
chr1:22164623(-) A-I      intronic
chr1:22257191(-) A-I      intronic
chr1:22257101(-) A-I      intronic
chr1:22172158(-) A-I      intronic
chr1:22163985(-) A-I      intronic
chr1:22172050(-) A-I      intronic
chr1:22162907(-) A-I      intronic
chr1:22261360(-) A-I      intronic
chr1:22152461(-) A-I      intronic
chr1:22163995(-) A-I      intronic
chr1:22153108(-) A-I      intronic
chr1:22164000(-) A-I      intronic
chr1:22153177(-) A-I      intronic
chr1:22153180(-) A-I      intronic
chr1:22153181(-) A-I      intronic
chr1:22153184(-) A-I      intronic
chr1:22164009(-) A-I      intronic
chr1:22153215(-) A-I      intronic
chr1:22153244(-) A-I      intronic
chr1:22153619(-) A-I      intronic
chr1:22172043(-) A-I      intronic
chr1:22259307(-) A-I      intronic
chr1:22261531(-) A-I      intronic
chr1:22153638(-) A-I      intronic
chr1:22153654(-) A-I      intronic
chr1:22162875(-) A-I      intronic
chr1:22252492(-) A-I      intronic
chr1:22257185(-) A-I      intronic
chr1:22252487(-) A-I      intronic
chr1:22162882(-) A-I      intronic
chr1:22162883(-) A-I      intronic
chr1:22163831(-) A-I      intronic
chr1:22244820(-) A-I      intronic
chr1:22171556(-) A-I      intronic
chr1:22164014(-) A-I      intronic
chr1:22164024(-) A-I      intronic
chr1:22163839(-) A-I      intronic
chr1:22163863(-) A-I      intronic
chr1:22253029(-) A-I      intronic
chr1:22244795(-) A-I      intronic
chr1:22244786(-) A-I      intronic
chr1:22164437(-) A-I      intronic
chr1:22163885(-) A-I      intronic
chr1:22253074(-) A-I      intronic
chr1:22163895(-) A-I      intronic
chr1:22163976(-) A-I      intronic
chr1:22189591(-) A-I      intronic
chr1:22172115(-) A-I      intronic
chr1:22257220(-) A-I      intronic
chr1:22243769(-) A-I      intronic
chr1:22190305(-) A-I      intronic
chr1:22163804(-) A-I      intronic
chr1:22153092(-) A-I      intronic
chr1:22153293(-) A-I      intronic
chr1:22243777(-) A-I      intronic
chr1:22153261(-) A-I      intronic
chr1:22252565(-) A-I      intronic
chr1:22246476(-) A-I      intronic
chr1:22257236(-) A-I      intronic
chr1:22153437(-) A-I      intronic
chr1:22163841(-) A-I      intronic
chr1:22255404(-) A-I      intronic
chr1:22153411(-) A-I      intronic
chr1:22255525(-) A-I      intronic
chr1:22255098(-) A-I      intronic
chr1:22163902(-) A-I      intronic
chr1:22152667(-) A-I      intronic
chr1:22164505(-) A-I      intronic
chr1:22255022(-) A-I      intronic
chr1:22162979(-) A-I      intronic
chr1:22257155(-) A-I      intronic
chr1:22164507(-) A-I      intronic
chr1:22252602(-) A-I      intronic
chr1:22171906(-) A-I      intronic
chr1:22152972(-) A-I      intronic
chr1:22164463(-) A-I      intronic
chr1:22164566(-) A-I      intronic
chr1:22257010(-) A-I      intronic
chr1:22153457(-) A-I      intronic
chr1:22153257(-) A-I      intronic
chr1:22164517(-) A-I      intronic
chr1:22162978(-) A-I      intronic
chr1:22164546(-) A-I      intronic
chr1:22153033(-) A-I      intronic
chr1:22163912(-) A-I      intronic
chr1:22171974(-) A-I      intronic
chr1:22172049(-) A-I      intronic
chr1:22172048(-) A-I      intronic
chr1:22153601(-) A-I      intronic
chr1:22208353(-) A-I      intronic
chr1:22171656(-) A-I      intronic
chr1:22163936(-) A-I      intronic
chr1:22153099(-) A-I      intronic
chr1:22153484(-) A-I      intronic
chr1:22245674(-) A-I      intronic
chr1:22153496(-) A-I      intronic
chr1:22153509(-) A-I      intronic
chr1:22152492(-) A-I      intronic
chr1:22153851(-) A-I      intronic
chr1:22153111(-) A-I      intronic
chr1:22253192(-) A-I      intronic
chr1:22153700(-) A-I      intronic
chr1:22164458(-) A-I      intronic
chr1:22257184(-) A-I      intronic
chr1:22163826(-) A-I      intronic
chr1:22246691(-) A-I      intronic
chr1:22163846(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HSPG2
chr1:22176302(-) T-C intron -    22484847
chr1:22176312(-) T-C intron -    22484847
chr1:22255525(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HSPG2
chr1:22148790-22148791(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960
chr1:22148831-22148832(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:22148931-22148932(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:22148996-22148997(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:22149009-22149010(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960
chr1:22149224-22149225(-) m6A 3'UTR//exon       24284625//27773535
chr1:22149531-22149532(-) m6A 3'UTR//exon       25456834//24981863//27371828
chr1:22149553-22149554(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27371828
chr1:22149567-22149568(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27371828
chr1:22149671-22149672(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828
chr1:22149713-22149714(-) m6A 3'UTR//exon       24284625//25456834//24981863
chr1:22149786-22149787(-) m6A 3'UTR//exon       24284625//24981863
chr1:22149860-22149861(-) m6A CDS//exon       24284625//24981863//27773536//22575960
chr1:22149911-22149912(-) m6A CDS//exon       27773536//22575960
chr1:22150255-22150256(-) m6A exon//intron       -
chr1:22150278-22150279(-) m6A exon//intron       -
chr1:22150319-22150320(-) m6A exon//intron       -
chr1:22150325-22150326(-) m6A exon//intron       -
chr1:22150840-22150841(-) m6A CDS//exon       24284625
chr1:22154893-22154894(-) m6A CDS//exon       22575960
chr1:22156152-22156153(-) m6A exon//intron       -
chr1:22159850-22159851(-) m6A CDS//exon       24284625
chr1:22160069-22160070(-) m6A CDS//exon       24284625
chr1:22162115-22162116(-) m6A CDS//exon       22575960
chr1:22162121-22162122(-) m6A CDS//exon       22575960
chr1:22163421-22163422(-) m6A CDS//intron       24284625
chr1:22169338-22169339(-) m6A CDS       24284625
chr1:22169351-22169352(-) m6A CDS       24284625
chr1:22169905-22169906(-) m6A CDS       24284625
chr1:22173016-22173017(-) m6A CDS//exon       24284625
chr1:22173029-22173030(-) m6A CDS//exon       24284625
chr1:22181900-22181901(-) m6A CDS       24284625
chr1:22183536-22183537(-) m6A CDS       22575960
chr1:22186491-22186492(-) m6A CDS       22575960
chr1:22188483-22188484(-) m6A CDS       22575960
chr1:22188522-22188523(-) m6A CDS       22575960
chr1:22190606-22190607(-) m6A CDS       22575960
chr1:22190623-22190624(-) m6A CDS       22575960
chr1:22213725-22213726(-) m6A CDS//exon       27773535
chr1:22213730-22213731(-) m6A CDS//exon       27773535
chr1:22214092-22214093(-) m6A CDS//exon       24284625//27773535
chr1:22214453-22214454(-) m6A CDS//exon       27773535
chr1:22216597-22216598(-) Gm CDS//exon       -
chr1:22216946-22216947(-) m6A CDS//exon//intron       22575960
chr1:22217081-22217082(-) m6A CDS//exon//intron       22575960
chr1:22222425-22222426(-) m6A CDS//exon       22575960
chr1:22222440-22222441(-) m6A CDS//exon       22575960
chr1:22222693-22222694(-) m6A CDS//exon       22575960
chr1:22222721-22222722(-) m6A CDS//exon       24209618//22575960
chr1:22222748-22222749(-) m6A CDS//exon       24209618//22575960
chr1:22222756-22222757(-) m6A CDS//exon       24209618//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HSPG2
Chromatin K562 cells     -
Cytosol HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-UL70-3p
l-685,458       5479543
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL70-3p
Interactor2: HSPG2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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