Basic Information:

  VIRBase ID:  

VHID00244153

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL70-5p:  MIMAT0003342          PANK4:  NM_018216     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL70-5p	PANK4
miRBase Accession/Entrez ID	MIMAT0003342	55229
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PANK4	chr1:2448493(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PANK4	chr1:2440074-2440075(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:2440217-2440218(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr1:2440267-2440268(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr1:2440409-2440410(-) m6A 3'UTR//CDS       24284625//24981863//27371828//27773536 chr1:2445492-2445493(-) m6A CDS//exon       27773535//27371828//27773536 chr1:2445517-2445518(-) m6A CDS//exon       27773535//27371828//27773536 chr1:2445811-2445812(-) m6A CDS       27773535//27371828 chr1:2445822-2445823(-) m6A CDS       27773535//27371828 chr1:2445873-2445874(-) m6A 3'UTR//CDS//exon       27371828 chr1:2450666-2450667(-) m6A 3'UTR//CDS       27773536 chr1:2450747-2450748(-) m6A 3'UTR//CDS       27773536 chr1:2451283-2451284(-) m6A 3'UTR//CDS       27773536 chr1:2451302-2451303(-) m6A 3'UTR//CDS       27773536 chr1:2451340-2451341(-) m6A 3'UTR//CDS       27773536 chr1:2452226-2452227(-) m6A 3'UTR//CDS       27773535 chr1:2452285-2452286(-) m6A 3'UTR//CDS//intron       27773535 chr1:2452644-2452645(-) m6A 3'UTR//CDS       27773535 chr1:2452739-2452740(-) m6A 3'UTR//CDS//exon       27773535 chr1:2452752-2452753(-) m6A 3'UTR//CDS//exon       27773535 chr1:2453298-2453299(-) m6A CDS//intron       27371828 chr1:2453322-2453323(-) m6A CDS//intron       27371828 chr1:2453337-2453338(-) m6A CDS//intron       27371828 chr1:2453354-2453355(-) m6A CDS//intron       27371828 chr1:2457976-2457977(-) m6A CDS//exon       25456834//24981863//27371828//27773536 chr1:2457985-2457986(-) m6A CDS//exon       25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PANK4	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL70-5p
Interactor2: PANK4

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg