Basic Information:

  VIRBase ID:  

VHID00240855

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-5p:  MIMAT0003341          SUSD6:  NM_014734     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US4-5p	SUSD6
miRBase Accession/Entrez ID	MIMAT0003341	9766
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DRAGO//KIAA0247

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SUSD6	chr14:70112536(+) A-I      intronic chr14:70112567(+) A-I      intronic chr14:70157953(+) A-I      intronic chr14:70166143(+) A-I      intronic chr14:70135961(+) A-I      intronic chr14:70135882(+) A-I      intronic chr14:70135373(+) A-I      intronic chr14:70135370(+) A-I      intronic chr14:70174289(+) A-I      intronic chr14:70173246(+) A-I      intronic chr14:70135357(+) A-I      intronic chr14:70135262(+) A-I      intronic chr14:70086361(+) A-I      intronic chr14:70134237(+) A-I      intronic chr14:70132157(+) A-I      intronic chr14:70134249(+) A-I      intronic chr14:70134307(+) A-I      intronic chr14:70156469(+) A-I      intronic chr14:70173295(+) A-I      intronic chr14:70134311(+) A-I      intronic chr14:70174367(+) A-I      intronic chr14:70111211(+) A-I      intronic chr14:70088994(+) A-I      intronic chr14:70113625(+) A-I      intronic chr14:70134233(+) A-I      intronic chr14:70135132(+) A-I      intronic chr14:70165941(+) A-I      intronic chr14:70157868(+) A-I      intronic chr14:70118988(+) A-I      intronic chr14:70089085(+) A-I      intronic chr14:70114592(+) A-I      intronic chr14:70114581(+) A-I      intronic chr14:70156573(+) A-I      intronic chr14:70157883(+) A-I      intronic chr14:70111095(+) A-I      intronic chr14:70113692(+) A-I      intronic chr14:70135165(+) A-I      intronic chr14:70113512(+) A-I      intronic chr14:70135166(+) A-I      intronic chr14:70122420(+) A-I      intronic chr14:70142600(+) A-I      intronic chr14:70111315(+) A-I      intronic chr14:70135175(+) A-I      intronic chr14:70157981(+) A-I      intronic chr14:70135225(+) A-I      intronic chr14:70111205(+) A-I      intronic chr14:70113483(+) A-I      intronic chr14:70171980(+) A-I      intronic chr14:70135254(+) A-I      intronic chr14:70114537(+) A-I      intronic chr14:70156592(+) A-I      intronic chr14:70122419(+) A-I      intronic chr14:70134158(+) A-I      intronic chr14:70122236(+) A-I      intronic chr14:70135301(+) A-I      intronic chr14:70114546(+) A-I      intronic chr14:70112566(+) A-I      intronic chr14:70166076(+) A-I      intronic chr14:70135096(+) A-I      intronic chr14:70158566(+) A-I      intronic chr14:70135302(+) A-I      intronic chr14:70112523(+) A-I      intronic chr14:70088930(+) A-I      intronic chr14:70086293(+) A-I      intronic chr14:70086341(+) A-I      intronic chr14:70157857(+) A-I      intronic chr14:70174272(+) A-I      intronic chr14:70173307(+) A-I      intronic chr14:70166024(+) A-I      intronic chr14:70174313(+) A-I      intronic chr14:70128586(+) A-I      intronic chr14:70157954(+) A-I      intronic chr14:70156462(+) A-I      intronic chr14:70135297(+) A-I      intronic chr14:70173361(+) A-I      intronic chr14:70135097(+) A-I      intronic chr14:70088999(+) A-I      intronic chr14:70158031(+) A-I      intronic chr14:70097235(+) A-I      intronic chr14:70156512(+) A-I      intronic chr14:70124087(+) A-I      intronic chr14:70122455(+) A-I      intronic chr14:70112592(+) A-I      intronic chr14:70089021(+) A-I      intronic chr14:70135187(+) A-I      intronic chr14:70135232(+) A-I      intronic chr14:70157913(+) A-I      intronic chr14:70132111(+) A-I      intronic chr14:70135219(+) A-I      intronic chr14:70173277(+) A-I      intronic chr14:70156618(+) A-I      intronic chr14:70174343(+) A-I      intronic chr14:70156535(+) A-I      intronic chr14:70112584(+) A-I      intronic chr14:70173290(+) A-I      intronic chr14:70157910(+) A-I      intronic chr14:70107328(+) A-I      intronic chr14:70174408(+) A-I      intronic chr14:70157858(+) A-I      intronic chr14:70132105(+) A-I      intronic chr14:70089159(+) A-I      intronic chr14:70135190(+) A-I      intronic chr14:70166156(+) A-I      intronic chr14:70173381(+) A-I      intronic chr14:70130908(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SUSD6	chr14:70078436-70078437(+) m6A 5'UTR//exon       24981863 chr14:70175590-70175591(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:70175645-70175646(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:70175679-70175680(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:70175731-70175732(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:70175754-70175755(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr14:70175770-70175771(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr14:70177860-70177861(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr14:70177893-70177894(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr14:70177945-70177946(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr14:70177969-70177970(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr14:70178106-70178107(+) m6A 3'UTR       - chr14:70181429-70181430(+) m6A 3'UTR       - chr14:70181453-70181454(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US4-5p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
	SUSD6	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US4-5p
Interactor2: SUSD6

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg