Detail Information

Basic Information:


  VIRBase ID:  

VHID00240377

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-5p:           SLC2A3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-5p SLC2A3
miRBase
Accession/Entrez ID		 MIMAT0003341 6515
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - GLUT3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC2A3
chr12:8078865(-) A-I      intronic
chr12:8078856(-) A-I      intronic
chr12:8087965(-) A-I      intronic
chr12:8076537(-) A-I      intronic
chr12:8076557(-) A-I      intronic
chr12:8078785(-) A-I      intronic
chr12:8076539(-) A-I      intronic
chr12:8078835(-) A-I      intronic
chr12:8078793(-) A-I      intronic
chr12:8078908(-) A-I      intronic
chr12:8078857(-) A-I      intronic
chr12:8078890(-) A-I      intronic
chr12:8083587(-) A-I      intronic
chr12:8087936(-) A-I      intronic
chr12:8087948(-) A-I      intronic
chr12:8076173(-) A-I      intronic
chr12:8076437(-) A-I      intronic
chr12:8076457(-) A-I      intronic
chr12:8076461(-) A-I      intronic
chr12:8076462(-) A-I      intronic
chr12:8076470(-) A-I      intronic
chr12:8076473(-) A-I      intronic
chr12:8076129(-) A-I      intronic
chr12:8076497(-) A-I      intronic
chr12:8080454(-) A-I      intronic
chr12:8076503(-) A-I      intronic
chr12:8076128(-) A-I      intronic
chr12:8076511(-) A-I      intronic
chr12:8076525(-) A-I      intronic
chr12:8076529(-) A-I      intronic
chr12:8076532(-) A-I      intronic
chr12:8076533(-) A-I      intronic
chr12:8076577(-) A-I      intronic
chr12:8076583(-) A-I      intronic
chr12:8078764(-) A-I      intronic
chr12:8078767(-) A-I      intronic
chr12:8078784(-) A-I      intronic
chr12:8078799(-) A-I      intronic
chr12:8078803(-) A-I      intronic
chr12:8078812(-) A-I      intronic
chr12:8078816(-) A-I      intronic
chr12:8078831(-) A-I      intronic
chr12:8078851(-) A-I      intronic
chr12:8078854(-) A-I      intronic
chr12:8078855(-) A-I      intronic
chr12:8078875(-) A-I      intronic
chr12:8078887(-) A-I      intronic
chr12:8078914(-) A-I      intronic
chr12:8078919(-) A-I      intronic
chr12:8078929(-) A-I      intronic
chr12:8078982(-) A-I      intronic
chr12:8079234(-) A-I      intronic
chr12:8079237(-) A-I      intronic
chr12:8080546(-) A-I      intronic
chr12:8080618(-) A-I      intronic
chr12:8080619(-) A-I      intronic
chr12:8080620(-) A-I      intronic
chr12:8080639(-) A-I      intronic
chr12:8080642(-) A-I      intronic
chr12:8080655(-) A-I      intronic
chr12:8080828(-) A-I      intronic
chr12:8080958(-) A-I      intronic
chr12:8080968(-) A-I      intronic
chr12:8081482(-) A-I      intronic
chr12:8081549(-) A-I      intronic
chr12:8082064(-) A-I      intronic
chr12:8084269(-) A-I      intronic
chr12:8084312(-) A-I      intronic
chr12:8084333(-) A-I      intronic
chr12:8084492(-) A-I      intronic
chr12:8084507(-) A-I      intronic
chr12:8084614(-) A-I      intronic
chr12:8084615(-) A-I      intronic
chr12:8087644(-) A-I      intronic
chr12:8087677(-) A-I      intronic
chr12:8087681(-) A-I      intronic
chr12:8087704(-) A-I      intronic
chr12:8087706(-) A-I      intronic
chr12:8076154(-) A-I      intronic
chr12:8076167(-) A-I      intronic
chr12:8076047(-) A-I      intronic
chr12:8076148(-) A-I      intronic
chr12:8076178(-) A-I      intronic
chr12:8081486(-) A-I      intronic
chr12:8076018(-) A-I      intronic
chr12:8076006(-) A-I      intronic
chr12:8075993(-) A-I      intronic
chr12:8075903(-) A-I      intronic
chr12:8075897(-) A-I      intronic
chr12:8075873(-) A-I      intronic
chr12:8075833(-) A-I      intronic
chr12:8075802(-) A-I      intronic
chr12:8075800(-) A-I      intronic
chr12:8075794(-) A-I      intronic
chr12:8075312(-) A-I      intronic
chr12:8074592(-) A-I      intronic
chr12:8074567(-) A-I      intronic
chr12:8076493(-) A-I      intronic
chr12:8076188(-) A-I      intronic
chr12:8076208(-) A-I      intronic
chr12:8076196(-) A-I      intronic
chr12:8076089(-) A-I      intronic
chr12:8075795(-) A-I      intronic
chr12:8076438(-) A-I      intronic
chr12:8076159(-) A-I      intronic
chr12:8076571(-) A-I      intronic
chr12:8076042(-) A-I      intronic
chr12:8076502(-) A-I      intronic
chr12:8076022(-) A-I      intronic
chr12:8075863(-) A-I      intronic
chr12:8076099(-) A-I      intronic
chr12:8076582(-) A-I      intronic
chr12:8075911(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC2A3
chr12:8072002-8072003(-) Y 3'UTR//exon       25219674
chr12:8073383-8073384(-) m6A 3'UTR//exon       24981863
chr12:8073645-8073646(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8073780-8073781(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8073789-8073790(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8073812-8073813(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr12:8073929-8073930(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr12:8073944-8073945(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr12:8074025-8074026(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8074048-8074049(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8074130-8074131(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8074142-8074143(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr12:8075457-8075458(-) m6A CDS//exon       24284625
chr12:8075515-8075516(-) m6A CDS//exon       24284625
chr12:8088623-8088624(-) m6A CDS//exon       24284625//26404942//27371828
chr12:8088649-8088650(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828
chr12:8088714-8088715(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828
chr12:8088731-8088732(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828
chr12:8088762-8088763(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828
chr12:8088786-8088787(-) m6A 5'UTR       24284625//25456834//24981863//26404942//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-5p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
SLC2A3
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-5p
Interactor2: SLC2A3

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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