Basic Information:

  VIRBase ID:  

VHID00239383

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          MAP1LC3C:  NM_001004343     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	MAP1LC3C
miRBase Accession/Entrez ID	MIMAT0001584	440738
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATG8J//LC3C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MAP1LC3C	chr1:242160496(-) A-I      intronic chr1:242159081(-) A-I      3'UTR chr1:242159202(-) A-I      3'UTR chr1:242159038(-) A-I      3'UTR chr1:242159990(-) A-I      intronic chr1:242159138(-) A-I      3'UTR chr1:242159073(-) A-I      3'UTR chr1:242159158(-) A-I      3'UTR chr1:242160655(-) A-I      intronic chr1:242159968(-) A-I      intronic chr1:242161355(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MAP1LC3C	chr1:242159486-242159487(-) m6A CDS       25456834 chr1:242159538-242159539(-) m6A CDS       25456834//24981863 chr1:242159588-242159589(-) m6A CDS       24981863 chr1:242162277-242162278(-) m6A CDS       - chr1:242162331-242162332(-) m6A 5'UTR       - chr1:242162354-242162355(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MAP1LC3C	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: MAP1LC3C

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid
Support Database	RepTar//VmiReg