Basic Information:

  VIRBase ID:  

VHID00239318

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          C5orf34:  NM_198566     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	C5orf34
miRBase Accession/Entrez ID	MIMAT0001584	375444
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C5orf34	chr5:43495529(-) A-I      intronic chr5:43495545(-) A-I      intronic chr5:43495552(-) A-I      intronic chr5:43495554(-) A-I      intronic chr5:43495566(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C5orf34	chr5:43509938(-) T-C intron -    22484847 chr5:43509957(-) T-C intron -    22484847 chr5:43509958(-) T-C intron -    22484847 chr5:43510040(-) T-C intron -    22484847 chr5:43510059(-) T-C intron -    22484847 chr5:43510107(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C5orf34	chr5:43486895-43486896(-) m6A 3'UTR       27773535//22608085 chr5:43487029-43487030(-) m6A CDS       27773535 chr5:43487069-43487070(-) m6A CDS       27773535 chr5:43487120-43487121(-) m6A CDS       27773535 chr5:43487136-43487137(-) m6A CDS       27773535 chr5:43487160-43487161(-) m6A CDS       27773535 chr5:43487185-43487186(-) m6A CDS       27773535 chr5:43495194-43495195(-) m6A intron       - chr5:43495238-43495239(-) m6A intron       24284625 chr5:43495273-43495274(-) m6A intron       24284625 chr5:43495313-43495314(-) m6A intron       - chr5:43496122-43496123(-) m6A intron       24284625//27773535//22608085 chr5:43496163-43496164(-) m6A intron       24284625//27773535//22608085 chr5:43496187-43496188(-) m6A intron       27773535//22608085 chr5:43496240-43496241(-) m6A intron       25456834//27773535//22608085 chr5:43496254-43496255(-) m6A intron       25456834//27773535//22608085 chr5:43496266-43496267(-) m6A intron       24284625//25456834//27773535//22575960//22608085 chr5:43496274-43496275(-) m6A intron       24284625//25456834//27773535//22575960//22608085 chr5:43496312-43496313(-) m6A intron       24284625//25456834//27773535//22575960//22608085 chr5:43496370-43496371(-) m6A intron       24284625//27773535//22575960//22608085 chr5:43496401-43496402(-) m6A intron       24284625//27773535//22575960//22608085 chr5:43496444-43496445(-) m6A intron       24284625//27773535//22575960//22608085 chr5:43496514-43496515(-) m6A intron       24284625//27773535//22608085 chr5:43496540-43496541(-) m6A intron       24284625//27773535//22608085 chr5:43506129-43506130(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:43506159-43506160(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:43506211-43506212(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr5:43506217-43506218(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr5:43506252-43506253(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr5:43506265-43506266(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr5:43506291-43506292(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr5:43506314-43506315(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr5:43509297-43509298(-) m6A CDS//intron       27773535 chr5:43509429-43509430(-) m6A CDS//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C5orf34	Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: C5orf34

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg