Detail Information

Basic Information:


  VIRBase ID:  

VHID00238737

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:           HAVCR2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US33-5p HAVCR2
miRBase
Accession/Entrez ID		 MIMAT0001584 84868
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CD366//HAVcr-2//KIM-3//SPTCL//Tim-3//TIM3//TIMD-3//TIMD3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HAVCR2
chr5:156515140(-) A-I      intronic
chr5:156515124(-) A-I      intronic
chr5:156526436(-) A-I      intronic
chr5:156526410(-) A-I      intronic
chr5:156526406(-) A-I      intronic
chr5:156526396(-) A-I      intronic
chr5:156535479(-) A-I      intronic
chr5:156535484(-) A-I      intronic
chr5:156524900(-) A-I      intronic
chr5:156524892(-) A-I      intronic
chr5:156523744(-) A-I      intronic
chr5:156524807(-) A-I      intronic
chr5:156525278(-) A-I      intronic
chr5:156525270(-) A-I      intronic
chr5:156525269(-) A-I      intronic
chr5:156523752(-) A-I      intronic
chr5:156526441(-) A-I      intronic
chr5:156526447(-) A-I      intronic
chr5:156535376(-) A-I      intronic
chr5:156523648(-) A-I      intronic
chr5:156523608(-) A-I      intronic
chr5:156521667(-) A-I      intronic
chr5:156521597(-) A-I      intronic
chr5:156520844(-) A-I      intronic
chr5:156520701(-) A-I      intronic
chr5:156529118(-) A-I      intronic
chr5:156529123(-) A-I      intronic
chr5:156520828(-) A-I      intronic
chr5:156520824(-) A-I      intronic
chr5:156535383(-) A-I      intronic
chr5:156520699(-) A-I      intronic
chr5:156519650(-) A-I      intronic
chr5:156519627(-) A-I      intronic
chr5:156519598(-) A-I      intronic
chr5:156529125(-) A-I      intronic
chr5:156529130(-) A-I      intronic
chr5:156529166(-) A-I      intronic
chr5:156529175(-) A-I      intronic
chr5:156535328(-) A-I      intronic
chr5:156535331(-) A-I      intronic
chr5:156535355(-) A-I      intronic
chr5:156535373(-) A-I      intronic
chr5:156519595(-) A-I      intronic
chr5:156519439(-) A-I      intronic
chr5:156517505(-) A-I      intronic
chr5:156517466(-) A-I      intronic
chr5:156517458(-) A-I      intronic
chr5:156517256(-) A-I      intronic
chr5:156517171(-) A-I      intronic
chr5:156513455(-) A-I      3'UTR
chr5:156513540(-) A-I      3'UTR
chr5:156513550(-) A-I      3'UTR
chr5:156517579(-) A-I      intronic
chr5:156528925(-) A-I      intronic
chr5:156517587(-) A-I      intronic
chr5:156517621(-) A-I      intronic
chr5:156524530(-) A-I      intronic
chr5:156529072(-) A-I      intronic
chr5:156524769(-) A-I      intronic
chr5:156519333(-) A-I      intronic
chr5:156524817(-) A-I      intronic
chr5:156526910(-) A-I      intronic
chr5:156520067(-) A-I      intronic
chr5:156517644(-) A-I      intronic
chr5:156517363(-) A-I      intronic
chr5:156517170(-) A-I      intronic
chr5:156517225(-) A-I      intronic
chr5:156517216(-) A-I      intronic
chr5:156529907(-) A-I      intronic
chr5:156528893(-) A-I      intronic
chr5:156524426(-) A-I      intronic
chr5:156517426(-) A-I      intronic
chr5:156528901(-) A-I      intronic
chr5:156520790(-) A-I      intronic
chr5:156519438(-) A-I      intronic
chr5:156517291(-) A-I      intronic
chr5:156519827(-) A-I      intronic
chr5:156517660(-) A-I      intronic
chr5:156519435(-) A-I      intronic
chr5:156519387(-) A-I      intronic
chr5:156524735(-) A-I      intronic
chr5:156514854(-) A-I      intronic
chr5:156526815(-) A-I      intronic
chr5:156517645(-) A-I      intronic
chr5:156524543(-) A-I      intronic
chr5:156521311(-) A-I      intronic
chr5:156529322(-) A-I      intronic
chr5:156520873(-) A-I      intronic
chr5:156515196(-) A-I      intronic
chr5:156517440(-) A-I      intronic
chr5:156517667(-) A-I      intronic
chr5:156524808(-) A-I      intronic
chr5:156514910(-) A-I      intronic
chr5:156515202(-) A-I      intronic
chr5:156523054(-) A-I      intronic
chr5:156530260(-) A-I      intronic
chr5:156515044(-) A-I      intronic
chr5:156521532(-) A-I      intronic
chr5:156520834(-) A-I      intronic
chr5:156517661(-) A-I      intronic
chr5:156524878(-) A-I      intronic
chr5:156515194(-) A-I      intronic
chr5:156517248(-) A-I      intronic
chr5:156523898(-) A-I      intronic
chr5:156517969(-) A-I      intronic
chr5:156521572(-) A-I      intronic
chr5:156524796(-) A-I      intronic
chr5:156516425(-) A-I      intronic
chr5:156517995(-) A-I      intronic
chr5:156530207(-) A-I      intronic
chr5:156530270(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HAVCR2
chr5:156533342(-) A-I intron -    15342557   //15258596
chr5:156533413(-) A-I intron -    15342557   //15258596
chr5:156533414(-) A-I intron -    15342557   //15258596
chr5:156533420(-) A-I intron -    15342557   //15258596
chr5:156533422(-) A-I intron -    15342557   //15258596
chr5:156515196(-) A-G intron -    22484847
chr5:156515202(-) A-G intron -    22484847
chr5:156517261(-) A-G intron -    22484847
chr5:156517426(-) A-G intron -    22484847
chr5:156528901(-) A-G intron -    22484847
chr5:156529907(-) A-G intron -    22484847
chr5:156530270(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HAVCR2
chr5:156513758-156513759(-) m6A 3'UTR       -
chr5:156513768-156513769(-) m6A 3'UTR       -
chr5:156513779-156513780(-) m6A 3'UTR       -
chr5:156513889-156513890(-) m6A 3'UTR       27371828
chr5:156513942-156513943(-) m6A 3'UTR       27371828
chr5:156513948-156513949(-) m6A 3'UTR       27371828
chr5:156513959-156513960(-) m6A 3'UTR       27371828
chr5:156513965-156513966(-) m6A 3'UTR       27371828
chr5:156514065-156514066(-) m6A 3'UTR       -
chr5:156533720-156533721(-) m6A 5'UTR//CDS//exon       -
chr5:156533796-156533797(-) m6A 5'UTR//CDS//exon       -
chr5:156533823-156533824(-) m6A 5'UTR//CDS//exon       -
chr5:156533891-156533892(-) m6A 5'UTR//CDS//exon       -
chr5:156564487-156564488(-) m6A intron       24981863//27773535
chr5:156564513-156564514(-) m6A intron       24981863//27773535//22608085
chr5:156564663-156564664(-) m6A intron       24209618//24981863//27773535//22608085
chr5:156564709-156564710(-) m6A intron       24209618//24981863//27773535//22608085
chr5:156564835-156564836(-) m6A intron       24209618//25456834//24981863//27773535//22608085
chr5:156564895-156564896(-) m6A intron       24209618//25456834//24981863//27773535//22608085
chr5:156564926-156564927(-) m6A intron       24209618//25456834//24981863//27773535//22608085
chr5:156564997-156564998(-) m6A intron       24981863
chr5:156565039-156565040(-) m6A intron       24981863
chr5:156565344-156565345(-) m6A intron       27773535
chr5:156565360-156565361(-) m6A intron       27773535
chr5:156565468-156565469(-) m6A intron       24981863//27773535//22608085
chr5:156565497-156565498(-) m6A intron       24981863//27773535//22608085
chr5:156565565-156565566(-) m6A intron       24981863//27773535//22608085
chr5:156565641-156565642(-) m6A intron       24209618//24981863//27773535//22608085
chr5:156565674-156565675(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr5:156565746-156565747(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr5:156565836-156565837(-) m6A intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:156565845-156565846(-) m6A intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:156565881-156565882(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:156565886-156565887(-) m6A intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:156565997-156565998(-) m6A intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr5:156566042-156566043(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr5:156566118-156566119(-) m6A intron       24284625//24209618//24981863//28052920//27773535//22608085
chr5:156566170-156566171(-) m6A intron       24284625//24209618//24981863//28052920//27773535//22608085
chr5:156566202-156566203(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr5:156566211-156566212(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr5:156566323-156566324(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr5:156566433-156566434(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr5:156569419-156569420(-) m6A intron       24284625//24209618//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HAVCR2
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US33-5p
Interactor2: HAVCR2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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