Basic Information:

  VIRBase ID:  

VHID00238503

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          ALG12:  NM_024105     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	ALG12
miRBase Accession/Entrez ID	MIMAT0001584	79087
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CDG1G//ECM39//hALG12//PP14673

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ALG12	chr22:50308580(-) A-I      intronic chr22:50311068(-) A-I      intronic chr22:50308577(-) A-I      intronic chr22:50306415(-) A-I      intronic chr22:50306387(-) A-I      intronic chr22:50311153(-) A-I      intronic chr22:50306432(-) A-I      intronic chr22:50301271(-) A-I      intronic chr22:50310121(-) A-I      intronic chr22:50301212(-) A-I      intronic chr22:50308608(-) A-I      intronic chr22:50309854(-) A-I      intronic chr22:50308500(-) A-I      intronic chr22:50298493(-) A-I      intronic chr22:50308972(-) A-I      intronic chr22:50305194(-) A-I      intronic chr22:50301270(-) A-I      intronic chr22:50309148(-) A-I      intronic chr22:50306482(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ALG12	chr22:50294254-50294255(-) m6A 3'UTR       25456834 chr22:50294356-50294357(-) m6A 3'UTR       - chr22:50294419-50294420(-) m6A 3'UTR       - chr22:50294429-50294430(-) m6A 3'UTR       - chr22:50294712-50294713(-) m6A 3'UTR       24284625 chr22:50296871-50296872(-) m6A 3'UTR       27773535 chr22:50296925-50296926(-) m6A 3'UTR       24981863//27773535 chr22:50297028-50297029(-) m6A 3'UTR       24981863//27773535 chr22:50297050-50297051(-) m6A 3'UTR       24284625//24981863//27773535 chr22:50297199-50297200(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr22:50297344-50297345(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr22:50297351-50297352(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr22:50297373-50297374(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr22:50297479-50297480(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr22:50297526-50297527(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr22:50297564-50297565(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr22:50297583-50297584(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr22:50297615-50297616(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr22:50297682-50297683(-) m6A 3'UTR//CDS//intron       24284625//27773535//27773536 chr22:50297866-50297867(-) m6A 3'UTR//CDS       24284625 chr22:50297987-50297988(-) m6A CDS       24284625 chr22:50301506-50301507(-) m6A CDS       24284625 chr22:50312008-50312009(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ALG12	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: ALG12

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg