Basic Information:

  VIRBase ID:  

VHID00238022

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          RSRC1:  NM_001271838     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	RSRC1
miRBase Accession/Entrez ID	MIMAT0001584	51319
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BM-011//MRT70//SFRS21//SRrp53

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RSRC1	chr3:158195303(+) A-I      intronic chr3:158195289(+) A-I      intronic chr3:158195288(+) A-I      intronic chr3:158195287(+) A-I      intronic chr3:158195277(+) A-I      intronic chr3:158195271(+) A-I      intronic chr3:158195270(+) A-I      intronic chr3:158031941(+) A-I      intronic chr3:158031980(+) A-I      intronic chr3:158031984(+) A-I      intronic chr3:158214632(+) A-I      intronic chr3:158214670(+) A-I      intronic chr3:158195385(+) A-I      intronic chr3:157951598(+) A-I      intronic chr3:157952802(+) A-I      intronic chr3:158214642(+) A-I      intronic chr3:158214673(+) A-I      intronic chr3:158192303(+) A-I      intronic chr3:158192302(+) A-I      intronic chr3:157960075(+) A-I      intronic chr3:157960057(+) A-I      intronic chr3:158214668(+) A-I      intronic chr3:157873470(+) A-I      intronic chr3:157873500(+) A-I      intronic chr3:158263127(+) A-I      3'UTR chr3:158079921(+) A-I      intronic chr3:158263108(+) A-I      3'UTR chr3:158079998(+) A-I      intronic chr3:157924588(+) A-I      intronic chr3:157924549(+) A-I      intronic chr3:158225676(+) A-I      intronic chr3:157857030(+) A-I      intronic chr3:158129400(+) A-I      intronic chr3:158184617(+) A-I      intronic chr3:157873466(+) A-I      intronic chr3:158185742(+) A-I      intronic chr3:158205553(+) A-I      intronic chr3:158205585(+) A-I      intronic chr3:158205618(+) A-I      intronic chr3:158205619(+) A-I      intronic chr3:158205632(+) A-I      intronic chr3:158207938(+) A-I      intronic chr3:158207943(+) A-I      intronic chr3:158207966(+) A-I      intronic chr3:157983354(+) A-I      intronic chr3:157984788(+) A-I      intronic chr3:158008155(+) A-I      intronic chr3:158032670(+) A-I      intronic chr3:158032691(+) A-I      intronic chr3:158032742(+) A-I      intronic chr3:158032770(+) A-I      intronic chr3:158035513(+) A-I      intronic chr3:158035569(+) A-I      intronic chr3:157924610(+) A-I      intronic chr3:157926381(+) A-I      intronic chr3:157926395(+) A-I      intronic chr3:157949122(+) A-I      intronic chr3:158208003(+) A-I      intronic chr3:158225671(+) A-I      intronic chr3:157857503(+) A-I      intronic chr3:157857540(+) A-I      intronic chr3:157857502(+) A-I      intronic chr3:157857145(+) A-I      intronic chr3:158260249(+) A-I      intronic chr3:157857014(+) A-I      intronic chr3:158052436(+) A-I      intronic chr3:158079870(+) A-I      intronic chr3:158079894(+) A-I      intronic chr3:157875476(+) A-I      intronic chr3:157857004(+) A-I      intronic chr3:157875471(+) A-I      intronic chr3:157856961(+) A-I      intronic chr3:158263136(+) A-I      3'UTR chr3:157857028(+) A-I      intronic chr3:157857039(+) A-I      intronic chr3:158263132(+) A-I      3'UTR chr3:158263130(+) A-I      3'UTR chr3:157857037(+) A-I      intronic chr3:157875504(+) A-I      intronic chr3:157898296(+) A-I      intronic chr3:157856935(+) A-I      intronic chr3:158263120(+) A-I      3'UTR chr3:157873453(+) A-I      intronic chr3:157873467(+) A-I      intronic chr3:157857481(+) A-I      intronic chr3:158260227(+) A-I      intronic chr3:157873360(+) A-I      intronic chr3:158224521(+) A-I      intronic chr3:158224488(+) A-I      intronic chr3:158224475(+) A-I      intronic chr3:158224388(+) A-I      intronic chr3:158224537(+) A-I      intronic chr3:158224399(+) A-I      intronic chr3:158224563(+) A-I      intronic chr3:158224493(+) A-I      intronic chr3:158224400(+) A-I      intronic chr3:158224474(+) A-I      intronic chr3:157953784(+) A-I      intronic chr3:157949010(+) A-I      intronic chr3:158224534(+) A-I      intronic chr3:158224489(+) A-I      intronic chr3:158224234(+) A-I      intronic chr3:158224360(+) A-I      intronic chr3:158224587(+) A-I      intronic chr3:157857562(+) A-I      intronic chr3:158224377(+) A-I      intronic chr3:158224338(+) A-I      intronic chr3:158224359(+) A-I      intronic chr3:158224322(+) A-I      intronic chr3:158224358(+) A-I      intronic chr3:158224376(+) A-I      intronic chr3:158224502(+) A-I      intronic chr3:158224562(+) A-I      intronic chr3:158079937(+) A-I      intronic chr3:158224571(+) A-I      intronic chr3:158008915(+) A-I      intronic chr3:157953782(+) A-I      intronic chr3:158185864(+) A-I      intronic chr3:158079929(+) A-I      intronic chr3:158224566(+) A-I      intronic chr3:158224361(+) A-I      intronic chr3:158098128(+) A-I      intronic chr3:158224582(+) A-I      intronic chr3:158032668(+) A-I      intronic chr3:158224549(+) A-I      intronic chr3:158185862(+) A-I      intronic chr3:158224528(+) A-I      intronic chr3:158225680(+) A-I      intronic chr3:158224576(+) A-I      intronic chr3:158224326(+) A-I      intronic chr3:158207897(+) A-I      intronic chr3:158224323(+) A-I      intronic chr3:158224393(+) A-I      intronic chr3:158061901(+) A-I      intronic chr3:158224573(+) A-I      intronic chr3:157849796(+) A-I      intronic chr3:158224383(+) A-I      intronic chr3:158224564(+) A-I      intronic chr3:158224398(+) A-I      intronic chr3:158185840(+) A-I      intronic chr3:158061810(+) A-I      intronic chr3:158224565(+) A-I      intronic chr3:158224380(+) A-I      intronic chr3:158031919(+) A-I      intronic chr3:158035202(+) A-I      intronic chr3:158184714(+) A-I      intronic chr3:158260197(+) A-I      intronic chr3:157911786(+) A-I      intronic chr3:158081208(+) A-I      intronic chr3:158031949(+) A-I      intronic chr3:158008843(+) A-I      intronic chr3:158205659(+) A-I      intronic chr3:157875449(+) A-I      intronic chr3:158079895(+) A-I      intronic chr3:157875450(+) A-I      intronic chr3:158225607(+) A-I      intronic chr3:158061928(+) A-I      intronic chr3:158205714(+) A-I      intronic chr3:158032045(+) A-I      intronic chr3:157918089(+) A-I      intronic chr3:158184727(+) A-I      intronic chr3:158184669(+) A-I      intronic chr3:158031975(+) A-I      intronic chr3:158079886(+) A-I      intronic chr3:157949066(+) A-I      intronic chr3:157857025(+) A-I      intronic chr3:157857588(+) A-I      intronic chr3:157911762(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RSRC1	chr3:158224234(+) A-I intron -    22028664 chr3:158224322(+) A-I intron -    22028664 chr3:158224323(+) A-I intron -    22028664 chr3:158224326(+) A-I intron -    22028664 chr3:158224338(+) A-I intron -    22028664 chr3:158224358(+) A-I intron -    22028664 chr3:158224359(+) A-I intron -    22028664 chr3:158224360(+) A-I intron -    22028664 chr3:158224361(+) A-I intron -    22028664 chr3:158224376(+) A-I intron -    22028664 chr3:158224377(+) A-I intron -    22028664 chr3:158224380(+) A-I intron -    22028664 chr3:158224383(+) A-I intron -    22028664 chr3:158224388(+) A-I intron -    22028664 chr3:158224393(+) A-I intron -    22028664 chr3:158224398(+) A-I intron -    22028664 chr3:158224399(+) A-I intron -    22028664 chr3:158224400(+) A-I intron -    22028664 chr3:158224474(+) A-I intron -    22028664 chr3:158224475(+) A-I intron -    22028664 chr3:158224488(+) A-I intron -    22028664 chr3:158224489(+) A-I intron -    22028664 chr3:158224493(+) A-I intron -    22028664 chr3:158224502(+) A-I intron -    22028664 chr3:158224521(+) A-I intron -    22028664 chr3:158224528(+) A-I intron -    22028664 chr3:158224534(+) A-I intron -    22028664 chr3:158224537(+) A-I intron -    22028664 chr3:158224549(+) A-I intron -    22028664 chr3:158224562(+) A-I intron -    22028664 chr3:158224563(+) A-I intron -    22028664 chr3:158224564(+) A-I intron -    22028664 chr3:158224565(+) A-I intron -    22028664 chr3:158224566(+) A-I intron -    22028664 chr3:158224571(+) A-I intron -    22028664 chr3:158224573(+) A-I intron -    22028664 chr3:158224576(+) A-I intron -    22028664 chr3:158224582(+) A-I intron -    22028664 chr3:158224587(+) A-I intron -    22028664 chr3:158160658(+) A-G intron -    22484847 chr3:158194850(+) A-G intron -    22484847 chr3:157856921(+) A-G intron -    22484847 chr3:157857025(+) A-G intron -    22484847 chr3:157857029(+) A-G intron -    22484847 chr3:157857043(+) A-G intron -    22484847 chr3:157857057(+) A-G intron -    22484847 chr3:157857481(+) A-G intron -    22484847 chr3:157857562(+) A-G intron -    22484847 chr3:157873360(+) A-G intron -    22484847 chr3:157873387(+) C-T intron -    22484847 chr3:157875450(+) A-G intron -    22484847 chr3:157948984(+) A-G intron -    22484847 chr3:157949050(+) A-G intron -    22484847 chr3:157949066(+) A-G intron -    22484847 chr3:157953736(+) A-C intron -    22484847 chr3:158031910(+) A-G intron -    22484847 chr3:158031919(+) A-G intron -    22484847 chr3:158031949(+) A-G intron -    22484847 chr3:158031975(+) A-G intron -    22484847 chr3:158032045(+) A-G intron -    22484847 chr3:158032668(+) A-G intron -    22484847 chr3:158035202(+) A-G intron -    22484847 chr3:158079895(+) A-G intron -    22484847 chr3:158079929(+) A-G intron -    22484847 chr3:158079937(+) A-G intron -    22484847 chr3:158093164(+) T-C intron -    22484847 chr3:158095462(+) C-T intron -    22484847 chr3:158098193(+) G-T intron -    22484847 chr3:158106588(+) T-C intron -    22484847 chr3:158184595(+) A-G intron -    22484847 chr3:158185840(+) A-G intron -    22484847 chr3:158185862(+) A-G intron -    22484847 chr3:158185864(+) A-G intron -    22484847 chr3:158185929(+) A-G intron -    22484847 chr3:158207897(+) A-G intron -    22484847 chr3:158235498(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RSRC1	chr3:157823782-157823783(+) m6A 5'UTR       - chr3:157825596-157825597(+) m6A 5'UTR//intron       - chr3:157825681-157825682(+) m6A 5'UTR//intron       - chr3:157825742-157825743(+) m6A 5'UTR//intron       24981863 chr3:157827880-157827881(+) m6A 5'UTR//intron       24981863//22608085 chr3:157827902-157827903(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr3:157827959-157827960(+) m6A 5'UTR//exon//intron       24284625//24981863//22608085 chr3:157828006-157828007(+) m6A 5'UTR//exon//intron       24284625//24981863//22575960//22608085 chr3:157828198-157828199(+) m6A 5'UTR//intron       24284625//24981863//22575960//22608085 chr3:157839921-157839922(+) m1A CDS//exon       26863196 chr3:157839949-157839950(+) m6A CDS//exon       24981863 chr3:157839992-157839993(+) m6A CDS//exon       24981863//27773535 chr3:157841772-157841773(+) m6A CDS//exon       27773535 chr3:157849908-157849909(+) m6A CDS//intron       27773535 chr3:157920872-157920873(+) m6A 3'UTR//CDS//intron       24209618//24981863//27773535 chr3:157921006-157921007(+) m6A 3'UTR//CDS//exon//intron       24209618//24981863//27773535 chr3:157943478-157943479(+) m6A CDS//intron       24981863//27773535 chr3:157943514-157943515(+) m6A CDS//intron       24981863//27773535 chr3:158015838-158015839(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr3:158015857-158015858(+) m6A 3'UTR//CDS//exon       24981863 chr3:158072656-158072657(+) m6A 3'UTR//CDS//exon       24981863 chr3:158072671-158072672(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr3:158187163-158187164(+) m6A exon//intron       24981863//27773535 chr3:158187506-158187507(+) m6A exon//intron       24981863 chr3:158254899-158254900(+) m6A 3'UTR//CDS       24981863 chr3:158254957-158254958(+) m6A 3'UTR//CDS       24981863 chr3:158261131-158261132(+) m6A 3'UTR//CDS//intron       24981863 chr3:158261146-158261147(+) m6A 3'UTR//CDS//intron       24981863 chr3:158261167-158261168(+) m6A 3'UTR//CDS//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RSRC1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: RSRC1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg