Basic Information:

  VIRBase ID:  

VHID00238009

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          CLDN18:  NM_016369     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	CLDN18
miRBase Accession/Entrez ID	MIMAT0001584	51208
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SFTA5//SFTPJ

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLDN18	chr3:137751560(+) A-I      3'UTR chr3:137751562(+) A-I      3'UTR chr3:137751187(+) A-I      3'UTR chr3:137751146(+) A-I      3'UTR chr3:137751507(+) A-I      3'UTR chr3:137751120(+) A-I      3'UTR chr3:137751525(+) A-I      3'UTR chr3:137751524(+) A-I      3'UTR chr3:137751521(+) A-I      3'UTR chr3:137751006(+) A-I      3'UTR chr3:137751547(+) A-I      3'UTR chr3:137751042(+) A-I      3'UTR chr3:137751124(+) A-I      3'UTR chr3:137751582(+) A-I      3'UTR chr3:137727494(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLDN18	chr3:137729279-137729280(+) m6A CDS//intron       24284625//22608085 chr3:137742610-137742611(+) m6A CDS       24284625//27773535//22575960//22608085 chr3:137748744-137748745(+) m6A 3'UTR//CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLDN18	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: CLDN18

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg