Basic Information:

  VIRBase ID:  

VHID00237720

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          SCN11A:  NR_164473     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	SCN11A
miRBase Accession/Entrez ID	MIMAT0001584	11280
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FEPS3//HSAN7//NaN//NAV1.9//PN5//SCN12A//SNS-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SCN11A	chr3:38986397(-) A-I      intronic chr3:38887784(-) A-I      3'UTR chr3:38887875(-) A-I      3'UTR chr3:38887782(-) A-I      3'UTR chr3:38887681(-) A-I      3'UTR chr3:38888041(-) A-I      3'UTR chr3:38985915(-) A-I      intronic chr3:38986195(-) A-I      intronic chr3:38980655(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SCN11A	chr3:38887769(-) A-I exon 3'UTR    15258596 chr3:38887778(-) A-I exon 3'UTR    15258596 chr3:38887782(-) A-I exon 3'UTR    15258596 chr3:38887784(-) A-I exon 3'UTR    15258596 chr3:38887912(-) A-I exon 3'UTR    15258596

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SCN11A	Cytosol HCC cell line (HepG2)     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: SCN11A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg