Basic Information:

  VIRBase ID:  

VHID00237564

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          USP3:  NR_046341     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	USP3
miRBase Accession/Entrez ID	MIMAT0001584	9960
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SIH003//UBP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	USP3	chr15:63869883(+) A-I      intronic chr15:63869875(+) A-I      intronic chr15:63870008(+) A-I      intronic chr15:63870024(+) A-I      intronic chr15:63868207(+) A-I      intronic chr15:63870030(+) A-I      intronic chr15:63870049(+) A-I      intronic chr15:63838072(+) A-I      intronic chr15:63870035(+) A-I      intronic chr15:63839083(+) A-I      intronic chr15:63869932(+) A-I      intronic chr15:63838023(+) A-I      intronic chr15:63822130(+) A-I      intronic chr15:63842280(+) A-I      intronic chr15:63828932(+) A-I      intronic chr15:63870626(+) A-I      intronic chr15:63838903(+) A-I      intronic chr15:63838868(+) A-I      intronic chr15:63839054(+) A-I      intronic chr15:63838850(+) A-I      intronic chr15:63859473(+) A-I      intronic chr15:63838818(+) A-I      intronic chr15:63860404(+) A-I      intronic chr15:63876503(+) A-I      intronic chr15:63837980(+) A-I      intronic chr15:63837907(+) A-I      intronic chr15:63837895(+) A-I      intronic chr15:63843094(+) A-I      intronic chr15:63837891(+) A-I      intronic chr15:63822657(+) A-I      intronic chr15:63812899(+) A-I      intronic chr15:63838879(+) A-I      intronic chr15:63839069(+) A-I      intronic chr15:63876352(+) A-I      intronic chr15:63838989(+) A-I      intronic chr15:63870249(+) A-I      intronic chr15:63822129(+) A-I      intronic chr15:63839014(+) A-I      intronic chr15:63839782(+) A-I      intronic chr15:63840196(+) A-I      intronic chr15:63840428(+) A-I      intronic chr15:63840441(+) A-I      intronic chr15:63840472(+) A-I      intronic chr15:63840550(+) A-I      intronic chr15:63840642(+) A-I      intronic chr15:63840654(+) A-I      intronic chr15:63840661(+) A-I      intronic chr15:63840690(+) A-I      intronic chr15:63840691(+) A-I      intronic chr15:63840972(+) A-I      intronic chr15:63840996(+) A-I      intronic chr15:63840997(+) A-I      intronic chr15:63842231(+) A-I      intronic chr15:63860475(+) A-I      intronic chr15:63842380(+) A-I      intronic chr15:63839006(+) A-I      intronic chr15:63842385(+) A-I      intronic chr15:63842404(+) A-I      intronic chr15:63839029(+) A-I      intronic chr15:63842408(+) A-I      intronic chr15:63838109(+) A-I      intronic chr15:63843078(+) A-I      intronic chr15:63859467(+) A-I      intronic chr15:63868250(+) A-I      intronic chr15:63868279(+) A-I      intronic chr15:63822604(+) A-I      intronic chr15:63868285(+) A-I      intronic chr15:63868286(+) A-I      intronic chr15:63868325(+) A-I      intronic chr15:63870549(+) A-I      intronic chr15:63839696(+) A-I      intronic chr15:63869552(+) A-I      intronic chr15:63869554(+) A-I      intronic chr15:63870298(+) A-I      intronic chr15:63874173(+) A-I      intronic chr15:63869592(+) A-I      intronic chr15:63873917(+) A-I      intronic chr15:63873855(+) A-I      intronic chr15:63873721(+) A-I      intronic chr15:63873711(+) A-I      intronic chr15:63839009(+) A-I      intronic chr15:63873699(+) A-I      intronic chr15:63873681(+) A-I      intronic chr15:63873088(+) A-I      intronic chr15:63873063(+) A-I      intronic chr15:63870299(+) A-I      intronic chr15:63860431(+) A-I      intronic chr15:63870743(+) A-I      intronic chr15:63870304(+) A-I      intronic chr15:63870328(+) A-I      intronic chr15:63870243(+) A-I      intronic chr15:63870264(+) A-I      intronic chr15:63870717(+) A-I      intronic chr15:63838082(+) A-I      intronic chr15:63870291(+) A-I      intronic chr15:63870324(+) A-I      intronic chr15:63870443(+) A-I      intronic chr15:63838017(+) A-I      intronic chr15:63873912(+) A-I      intronic chr15:63870592(+) A-I      intronic chr15:63870713(+) A-I      intronic chr15:63822746(+) A-I      intronic chr15:63875634(+) A-I      intronic chr15:63869600(+) A-I      intronic chr15:63874112(+) A-I      intronic chr15:63837995(+) A-I      intronic chr15:63839690(+) A-I      intronic chr15:63838938(+) A-I      intronic chr15:63870646(+) A-I      intronic chr15:63840230(+) A-I      intronic chr15:63839862(+) A-I      intronic chr15:63839673(+) A-I      intronic chr15:63873913(+) A-I      intronic chr15:63822189(+) A-I      intronic chr15:63839835(+) A-I      intronic chr15:63860420(+) A-I      intronic chr15:63814362(+) A-I      intronic chr15:63819139(+) A-I      intronic chr15:63869570(+) A-I      intronic chr15:63860373(+) A-I      intronic chr15:63869824(+) A-I      intronic chr15:63822646(+) A-I      intronic chr15:63822751(+) A-I      intronic chr15:63840429(+) A-I      intronic chr15:63822074(+) A-I      intronic chr15:63822712(+) A-I      intronic chr15:63873789(+) A-I      intronic chr15:63837994(+) A-I      intronic chr15:63870310(+) A-I      intronic chr15:63837961(+) A-I      intronic chr15:63839747(+) A-I      intronic chr15:63837984(+) A-I      intronic chr15:63842240(+) A-I      intronic chr15:63860466(+) A-I      intronic chr15:63840583(+) A-I      intronic chr15:63822193(+) A-I      intronic chr15:63839808(+) A-I      intronic chr15:63822068(+) A-I      intronic chr15:63875588(+) A-I      intronic chr15:63873657(+) A-I      intronic chr15:63859474(+) A-I      intronic chr15:63822786(+) A-I      intronic chr15:63840162(+) A-I      intronic chr15:63822747(+) A-I      intronic chr15:63873189(+) A-I      intronic chr15:63859406(+) A-I      intronic chr15:63870526(+) A-I      intronic chr15:63870690(+) A-I      intronic chr15:63869930(+) A-I      intronic chr15:63869865(+) A-I      intronic chr15:63840178(+) A-I      intronic chr15:63840618(+) A-I      intronic chr15:63822135(+) A-I      intronic chr15:63839081(+) A-I      intronic chr15:63840423(+) A-I      intronic chr15:63873942(+) A-I      intronic chr15:63840992(+) A-I      intronic chr15:63859454(+) A-I      intronic chr15:63874361(+) A-I      intronic chr15:63837914(+) A-I      intronic chr15:63840625(+) A-I      intronic chr15:63840225(+) A-I      intronic chr15:63873802(+) A-I      intronic chr15:63840967(+) A-I      intronic chr15:63838095(+) A-I      intronic chr15:63875556(+) A-I      intronic chr15:63840433(+) A-I      intronic chr15:63860299(+) A-I      intronic chr15:63840122(+) A-I      intronic chr15:63860375(+) A-I      intronic chr15:63859448(+) A-I      intronic chr15:63869903(+) A-I      intronic chr15:63838059(+) A-I      intronic chr15:63869644(+) A-I      intronic chr15:63842428(+) A-I      intronic chr15:63822072(+) A-I      intronic chr15:63842402(+) A-I      intronic chr15:63840357(+) A-I      intronic chr15:63875531(+) A-I      intronic chr15:63840853(+) A-I      intronic chr15:63839674(+) A-I      intronic chr15:63868351(+) A-I      intronic chr15:63839719(+) A-I      intronic chr15:63837935(+) A-I      intronic chr15:63870259(+) A-I      intronic chr15:63840664(+) A-I      intronic chr15:63841010(+) A-I      intronic chr15:63870354(+) A-I      intronic chr15:63838031(+) A-I      intronic chr15:63838049(+) A-I      intronic chr15:63822788(+) A-I      intronic chr15:63873987(+) A-I      intronic chr15:63816760(+) A-I      intronic chr15:63870054(+) A-I      intronic chr15:63822722(+) A-I      intronic chr15:63822721(+) A-I      intronic chr15:63869773(+) A-I      intronic chr15:63837992(+) A-I      intronic chr15:63849344(+) A-I      intronic chr15:63860478(+) A-I      intronic chr15:63838039(+) A-I      intronic chr15:63842384(+) A-I      intronic chr15:63874401(+) A-I      intronic chr15:63822149(+) A-I      intronic chr15:63842288(+) A-I      intronic chr15:63838992(+) A-I      intronic chr15:63870275(+) A-I      intronic chr15:63822075(+) A-I      intronic chr15:63837913(+) A-I      intronic chr15:63839657(+) A-I      intronic chr15:63838012(+) A-I      intronic chr15:63840195(+) A-I      intronic chr15:63822140(+) A-I      intronic chr15:63840973(+) A-I      intronic chr15:63839854(+) A-I      intronic chr15:63841032(+) A-I      intronic chr15:63875583(+) A-I      intronic chr15:63840199(+) A-I      intronic chr15:63875555(+) A-I      intronic chr15:63874144(+) A-I      intronic chr15:63869789(+) A-I      intronic chr15:63843101(+) A-I      intronic chr15:63870278(+) A-I      intronic chr15:63822717(+) A-I      intronic chr15:63870548(+) A-I      intronic chr15:63842358(+) A-I      intronic chr15:63840852(+) A-I      intronic chr15:63860298(+) A-I      intronic chr15:63841011(+) A-I      intronic chr15:63838010(+) A-I      intronic chr15:63822573(+) A-I      intronic chr15:63842200(+) A-I      intronic chr15:63873631(+) A-I      intronic chr15:63860474(+) A-I      intronic chr15:63839818(+) A-I      intronic chr15:63837900(+) A-I      intronic chr15:63840954(+) A-I      intronic chr15:63868369(+) A-I      intronic chr15:63869786(+) A-I      intronic chr15:63870005(+) A-I      intronic chr15:63870376(+) A-I      intronic chr15:63840801(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	USP3	chr15:63837185(+) A-I intron -    15342557 chr15:63838039(+) A-I intron -    15342557 chr15:63838049(+) A-I intron -    15342557   //22327324 chr15:63838059(+) A-I intron -    15342557 chr15:63838082(+) A-I intron -    15342557 chr15:63837900(+) A-I intron -    22327324 chr15:63840230(+) A-I intron -    22327324 chr15:63839657(+) A-I intron -    21960545 chr15:63843463(+) A-I intron -    21960545 chr15:63870144(+) A-I intron -    21960545 chr15:63834630(+) T-C intron -    22484847 chr15:63822075(+) A-G intron -    22484847 chr15:63837900(+) A-G intron -    22484847 chr15:63837992(+) A-G intron -    22484847 chr15:63838049(+) A-G intron -    22484847 chr15:63838109(+) A-G intron -    22484847 chr15:63838992(+) A-G intron -    22484847 chr15:63839006(+) A-G intron -    22484847 chr15:63839657(+) A-G intron -    22484847 chr15:63839690(+) A-G intron -    22484847 chr15:63839747(+) A-G intron -    22484847 chr15:63839854(+) A-G intron -    22484847 chr15:63840230(+) A-G intron -    22484847 chr15:63869824(+) A-G intron -    22484847 chr15:63873987(+) A-G intron -    22484847 chr15:63875583(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	USP3	chr15:63796981-63796982(+) m6A CDS//exon       25456834 chr15:63807671-63807672(+) m6A 5'UTR//intron       25456834 chr15:63882871-63882872(+) m6A 3'UTR//CDS//exon       24981863 chr15:63882950-63882951(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22608085 chr15:63882991-63882992(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr15:63883018-63883019(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr15:63883065-63883066(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr15:63883170-63883171(+) m6A 3'UTR//exon       24284625//24981863 chr15:63883210-63883211(+) m6A 3'UTR//exon       24284625//24981863 chr15:63883277-63883278(+) m6A 3'UTR       24284625 chr15:63883441-63883442(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr15:63883567-63883568(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr15:63885634-63885635(+) m6A 3'UTR//intron       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	USP3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: USP3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg