Detail Information

Basic Information:


  VIRBase ID:  

VHID00237529

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:           ZBTB24:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US33-5p ZBTB24
miRBase
Accession/Entrez ID		 MIMAT0001584 9841
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - BIF1//ICF2//PATZ2//ZNF450

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZBTB24
chr6:109799792(-) A-I      intronic
chr6:109799804(-) A-I      intronic
chr6:109799795(-) A-I      intronic
chr6:109786007(-) A-I      3'UTR
chr6:109784287(-) A-I      3'UTR
chr6:109785922(-) A-I      3'UTR
chr6:109784455(-) A-I      3'UTR
chr6:109784295(-) A-I      3'UTR
chr6:109785940(-) A-I      3'UTR
chr6:109784439(-) A-I      3'UTR
chr6:109799817(-) A-I      intronic
chr6:109784208(-) A-I      3'UTR
chr6:109785887(-) A-I      3'UTR
chr6:109785914(-) A-I      3'UTR
chr6:109784354(-) A-I      3'UTR
chr6:109785946(-) A-I      3'UTR
chr6:109784226(-) A-I      3'UTR
chr6:109785952(-) A-I      3'UTR
chr6:109784257(-) A-I      3'UTR
chr6:109784286(-) A-I      3'UTR
chr6:109785923(-) A-I      3'UTR
chr6:109785909(-) A-I      3'UTR
chr6:109785995(-) A-I      3'UTR
chr6:109784237(-) A-I      3'UTR
chr6:109785962(-) A-I      3'UTR
chr6:109786003(-) A-I      3'UTR
chr6:109784438(-) A-I      3'UTR
chr6:109798453(-) A-I      intronic
chr6:109803816(-) A-I      intronic
chr6:109798415(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZBTB24
chr6:109784286(-) A-I exon 3'UTR    15258596   //22327324
chr6:109785909(-) A-I exon 3'UTR    15258596   //21960545   //22327324
chr6:109785946(-) A-I exon 3'UTR    15258596   //21960545
chr6:109786003(-) A-I exon 3'UTR    15258596   //21960545   //22327324
chr6:109786009(-) A-I exon 3'UTR    15258596   //16100382
chr6:109784327(-) A-I exon 3'UTR    22327324
chr6:109784328(-) A-I exon 3'UTR    22327324
chr6:109784354(-) A-I exon 3'UTR    21960545
chr6:109784327(-) A-G exon 3'UTR    21725310
chr6:109785909(-) A-G exon 3'UTR    21725310   //22484847
chr6:109784286(-) A-G exon 3'UTR    22484847
chr6:109784301(-) A-G exon 3'UTR    22484847
chr6:109784328(-) A-G exon 3'UTR    22484847
chr6:109784460(-) A-G exon 3'UTR    22484847
chr6:109784461(-) A-G exon 3'UTR    22484847
chr6:109785887(-) A-G exon 3'UTR    22484847
chr6:109785914(-) A-G exon 3'UTR    22484847
chr6:109785923(-) A-G exon 3'UTR    22484847
chr6:109785946(-) A-G exon 3'UTR    22484847
chr6:109785952(-) A-G exon 3'UTR    22484847
chr6:109785995(-) A-G exon 3'UTR    22484847
chr6:109786003(-) A-G exon 3'UTR    22484847
chr6:109803816(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB24
chr6:109785289-109785290(-) m6A 3'UTR       27773535
chr6:109785311-109785312(-) m6A 3'UTR       27773535
chr6:109785352-109785353(-) m6A 3'UTR       27773535
chr6:109786592-109786593(-) m6A 3'UTR       27773535
chr6:109786795-109786796(-) m6A 3'UTR       27773535
chr6:109787045-109787046(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:109787184-109787185(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:109787209-109787210(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:109787217-109787218(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109787253-109787254(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109787302-109787303(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109787307-109787308(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109787387-109787388(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:109787399-109787400(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:109787639-109787640(-) m6A CDS       24981863
chr6:109796620-109796621(-) m6A CDS       27773535
chr6:109796660-109796661(-) m6A CDS       27773535
chr6:109797412-109797413(-) m6A CDS       27773535
chr6:109802336-109802337(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109802405-109802406(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109802425-109802426(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109802440-109802441(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:109802502-109802503(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:109802516-109802517(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:109802621-109802622(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109802639-109802640(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109802644-109802645(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:109802663-109802664(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:109802698-109802699(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr6:109802737-109802738(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr6:109802807-109802808(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:109802849-109802850(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:109802908-109802909(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:109802975-109802976(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:109803219-109803220(-) m6A CDS       24284625//24981863//27773535//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZBTB24
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US33-5p
Interactor2: ZBTB24

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...