Basic Information:

  VIRBase ID:  

VHID00237399

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          SPHK1:  NM_182965     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	SPHK1
miRBase Accession/Entrez ID	MIMAT0001584	8877
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SPHK

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPHK1	chr17:74379172-74379173(+) m6A exon//intron       27773536 chr17:74380873-74380874(+) m6A 5'UTR//intron       24284625 chr17:74380878-74380879(+) m6A 5'UTR//intron       24284625 chr17:74381129-74381130(+) m6A 5'UTR//intron       24209618 chr17:74381406-74381407(+) m6A 5'UTR//intron       - chr17:74381421-74381422(+) m6A 5'UTR//intron       - chr17:74381432-74381433(+) m6A 5'UTR//intron       - chr17:74381501-74381502(+) m6A 5'UTR//intron       - chr17:74381840-74381841(+) m6A exon//intron       - chr17:74382310-74382311(+) m6A CDS//exon       24284625 chr17:74382402-74382403(+) m6A exon//intron       24284625 chr17:74382909-74382910(+) m6A CDS//exon       22575960 chr17:74382963-74382964(+) m6A CDS//exon       24284625//22575960 chr17:74383044-74383045(+) m6A CDS//exon       24284625//24981863//22575960 chr17:74383175-74383176(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr17:74383259-74383260(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr17:74383278-74383279(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr17:74383581-74383582(+) m6A CDS//exon       - chr17:74383705-74383706(+) m6A 3'UTR//exon       24284625 chr17:74383765-74383766(+) m6A 3'UTR//exon       - chr17:74383811-74383812(+) m6A 3'UTR//exon       - chr17:74383893-74383894(+) m6A 3'UTR//exon       - chr17:74383908-74383909(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SPHK1	Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: SPHK1

Evidence Support:

Prediction-Evidence	cRep//RNAHybrid
Support Database	RepTar//VmiReg