Basic Information:

  VIRBase ID:  

VHID00237278

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          USH2A:  NM_206933     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	USH2A
miRBase Accession/Entrez ID	MIMAT0001584	7399
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ1111A8.1//RP39//US2//USH2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	USH2A	chr1:215900943(-) A-I      intronic chr1:216472321(-) A-I      intronic chr1:216557187(-) A-I      intronic chr1:216595753(-) A-I      5'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	USH2A	chr1:215944916(-) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	USH2A	chr1:215796334-215796335(-) m6A 3'UTR       27773535 chr1:215796368-215796369(-) m6A 3'UTR       27773535 chr1:215796385-215796386(-) m6A 3'UTR       27773535 chr1:215796445-215796446(-) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	USH2A	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: USH2A

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg