Basic Information:

  VIRBase ID:  

VHID00237249

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          THRB:  NM_000461     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	THRB
miRBase Accession/Entrez ID	MIMAT0001584	7068
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C-ERBA-2//C-ERBA-BETA//ERBA2//GRTH//NR1A2//PRTH//THR1//THRB1//THRB2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	THRB	chr3:24224964(-) A-I      intronic chr3:24223623(-) A-I      intronic chr3:24223592(-) A-I      intronic chr3:24223580(-) A-I      intronic chr3:24199313(-) A-I      intronic chr3:24489492(-) A-I      intronic chr3:24225023(-) A-I      intronic chr3:24489322(-) A-I      intronic chr3:24489314(-) A-I      intronic chr3:24489310(-) A-I      intronic chr3:24489309(-) A-I      intronic chr3:24190048(-) A-I      intronic chr3:24489319(-) A-I      intronic chr3:24225033(-) A-I      intronic chr3:24313748(-) A-I      intronic chr3:24225026(-) A-I      intronic chr3:24489551(-) A-I      intronic chr3:24489547(-) A-I      intronic chr3:24489540(-) A-I      intronic chr3:24489518(-) A-I      intronic chr3:24489348(-) A-I      intronic chr3:24506986(-) A-I      intronic chr3:24370663(-) A-I      intronic chr3:24370639(-) A-I      intronic chr3:24370635(-) A-I      intronic chr3:24370632(-) A-I      intronic chr3:24370631(-) A-I      intronic chr3:24370602(-) A-I      intronic chr3:24225091(-) A-I      intronic chr3:24225067(-) A-I      intronic chr3:24225066(-) A-I      intronic chr3:24225061(-) A-I      intronic chr3:24225056(-) A-I      intronic chr3:24418521(-) A-I      intronic chr3:24418512(-) A-I      intronic chr3:24418507(-) A-I      intronic chr3:24368432(-) A-I      intronic chr3:24368429(-) A-I      intronic chr3:24368425(-) A-I      intronic chr3:24295665(-) A-I      intronic chr3:24295661(-) A-I      intronic chr3:24295610(-) A-I      intronic chr3:24225137(-) A-I      intronic chr3:24225130(-) A-I      intronic chr3:24225120(-) A-I      intronic chr3:24224991(-) A-I      intronic chr3:24224983(-) A-I      intronic chr3:24311071(-) A-I      intronic chr3:24224950(-) A-I      intronic chr3:24370600(-) A-I      intronic chr3:24367855(-) A-I      intronic chr3:24313823(-) A-I      intronic chr3:24366943(-) A-I      intronic chr3:24228274(-) A-I      intronic chr3:24367837(-) A-I      intronic chr3:24367014(-) A-I      intronic chr3:24366933(-) A-I      intronic chr3:24366973(-) A-I      intronic chr3:24418439(-) A-I      intronic chr3:24504908(-) A-I      intronic chr3:24224987(-) A-I      intronic chr3:24224926(-) A-I      intronic chr3:24311208(-) A-I      intronic chr3:24422530(-) A-I      intronic chr3:24225081(-) A-I      intronic chr3:24228311(-) A-I      intronic chr3:24370529(-) A-I      intronic chr3:24225159(-) A-I      intronic chr3:24367012(-) A-I      intronic chr3:24313806(-) A-I      intronic chr3:24368438(-) A-I      intronic chr3:24311028(-) A-I      intronic chr3:24224943(-) A-I      intronic chr3:24368394(-) A-I      intronic chr3:24484493(-) A-I      intronic chr3:24225076(-) A-I      intronic chr3:24370541(-) A-I      intronic chr3:24311009(-) A-I      intronic chr3:24311019(-) A-I      intronic chr3:24366913(-) A-I      intronic chr3:24367926(-) A-I      intronic chr3:24311088(-) A-I      intronic chr3:24311055(-) A-I      intronic chr3:24492998(-) A-I      intronic chr3:24224997(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	THRB	chr3:24321108(-) A-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	THRB	chr3:24159519-24159520(-) m6A 3'UTR       27773535 chr3:24159539-24159540(-) m6A 3'UTR       27773535 chr3:24159575-24159576(-) m6A 3'UTR       27773535 chr3:24159594-24159595(-) m6A 3'UTR       27773535 chr3:24159609-24159610(-) m6A 3'UTR       27773535 chr3:24160827-24160828(-) m6A 3'UTR       27773535 chr3:24160840-24160841(-) m6A 3'UTR       24981863//27773535 chr3:24160942-24160943(-) m6A 3'UTR       24981863//27773535//22608085 chr3:24160998-24160999(-) m6A 3'UTR       25456834//24981863//27773535//22608085 chr3:24161014-24161015(-) m6A 3'UTR       25456834//24981863//27773535//22608085 chr3:24161061-24161062(-) m6A 3'UTR       25456834//24981863//27773535//22608085 chr3:24161115-24161116(-) m6A 3'UTR       25456834//27773535//22608085 chr3:24161658-24161659(-) m6A 3'UTR       - chr3:24161663-24161664(-) m6A 3'UTR       - chr3:24161686-24161687(-) m6A 3'UTR       - chr3:24161729-24161730(-) m6A 3'UTR       - chr3:24163026-24163027(-) m6A 3'UTR       27773535 chr3:24163101-24163102(-) m6A 3'UTR       27773535 chr3:24163111-24163112(-) m6A 3'UTR       27773535 chr3:24163175-24163176(-) m6A 3'UTR       27773535 chr3:24163181-24163182(-) m6A 3'UTR       27773535 chr3:24163205-24163206(-) m6A 3'UTR       27773535 chr3:24163904-24163905(-) m6A 3'UTR       24981863//27773535//22608085 chr3:24163910-24163911(-) m6A 3'UTR       24981863//27773535//22608085 chr3:24163952-24163953(-) m6A 3'UTR       24981863//27773535//22608085 chr3:24164018-24164019(-) m6A 3'UTR       24981863//27773535//22608085 chr3:24164037-24164038(-) m6A 3'UTR       24981863//27773535//22608085 chr3:24164065-24164066(-) m6A 3'UTR       24981863//27773535 chr3:24164123-24164124(-) m6A 3'UTR       24981863//27773535 chr3:24164198-24164199(-) m6A 3'UTR       27773535 chr3:24164236-24164237(-) m6A 3'UTR       27773535 chr3:24164373-24164374(-) m6A 3'UTR       25456834//24981863//27773535//22608085 chr3:24164413-24164414(-) m6A CDS       25456834//24981863//27773535//22608085 chr3:24164500-24164501(-) m6A CDS       24981863//27773535//22608085 chr3:24164527-24164528(-) m6A CDS       24981863//27773535//22608085 chr3:24164548-24164549(-) m6A CDS       24981863//27773535//22608085 chr3:24169154-24169155(-) m6A CDS       25456834//24981863//27773535//22608085 chr3:24169234-24169235(-) m6A CDS       24981863//27773535 chr3:24174938-24174939(-) m6A CDS       27773535 chr3:24174945-24174946(-) m6A CDS       27773535 chr3:24185059-24185060(-) m6A CDS       27773535 chr3:24185145-24185146(-) m6A CDS       24981863//27773535 chr3:24536263-24536264(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	THRB	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: THRB

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg