Basic Information:

  VIRBase ID:  

VHID00237237

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          TCTA:  NM_022171     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	TCTA
miRBase Accession/Entrez ID	MIMAT0001584	6988
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TCTA	chr3:49451887(+) A-I      intronic chr3:49451847(+) A-I      intronic chr3:49451846(+) A-I      intronic chr3:49451728(+) A-I      intronic chr3:49451820(+) A-I      intronic chr3:49451768(+) A-I      intronic chr3:49451742(+) A-I      intronic chr3:49452858(+) A-I      3'UTR chr3:49452877(+) A-I      3'UTR chr3:49452931(+) A-I      3'UTR chr3:49452761(+) A-I      3'UTR chr3:49452758(+) A-I      3'UTR chr3:49452790(+) A-I      3'UTR chr3:49452793(+) A-I      3'UTR chr3:49452798(+) A-I      3'UTR chr3:49452799(+) A-I      3'UTR chr3:49452822(+) A-I      3'UTR chr3:49452834(+) A-I      3'UTR chr3:49452795(+) A-I      3'UTR chr3:49452825(+) A-I      3'UTR chr3:49452890(+) A-I      3'UTR chr3:49452901(+) A-I      3'UTR chr3:49452928(+) A-I      3'UTR chr3:49452762(+) A-I      3'UTR chr3:49452738(+) A-I      3'UTR chr3:49452752(+) A-I      3'UTR chr3:49452701(+) A-I      3'UTR chr3:49452686(+) A-I      3'UTR chr3:49452764(+) A-I      3'UTR chr3:49452772(+) A-I      3'UTR chr3:49452773(+) A-I      3'UTR chr3:49452789(+) A-I      3'UTR chr3:49452784(+) A-I      3'UTR chr3:49452787(+) A-I      3'UTR chr3:49452818(+) A-I      3'UTR chr3:49452788(+) A-I      3'UTR chr3:49452721(+) A-I      3'UTR chr3:49452953(+) A-I      3'UTR chr3:49452855(+) A-I      3'UTR chr3:49452828(+) A-I      3'UTR chr3:49452802(+) A-I      3'UTR chr3:49452929(+) A-I      3'UTR chr3:49452898(+) A-I      3'UTR chr3:49452796(+) A-I      3'UTR chr3:49452936(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TCTA	chr3:49452672(+) A-G intron -    22484847 chr3:49452695(+) A-G intron -    22484847 chr3:49452787(+) A-G intron -    22484847 chr3:49452788(+) A-G intron -    22484847 chr3:49452802(+) A-G intron -    22484847 chr3:49452818(+) A-G intron -    22484847 chr3:49452829(+) A-G intron -    22484847 chr3:49452852(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TCTA	chr3:49449798-49449799(+) m6A 5'UTR//exon       24981863 chr3:49449820-49449821(+) m6A 5'UTR//exon       24981863 chr3:49449956-49449957(+) m6A CDS//exon       24284625//24981863 chr3:49452369-49452370(+) m6A 3'UTR//exon       24284625 chr3:49452378-49452379(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TCTA	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: TCTA

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg