Basic Information:

  VIRBase ID:  

VHID00237005

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          NPAS2:  NM_002518     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	NPAS2
miRBase Accession/Entrez ID	MIMAT0001584	4862
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bHLHe9//MOP4//PASD4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NPAS2	chr2:101590373(+) A-I      intronic chr2:101467228(+) A-I      intronic chr2:101515730(+) A-I      intronic chr2:101514663(+) A-I      intronic chr2:101514657(+) A-I      intronic chr2:101514653(+) A-I      intronic chr2:101514649(+) A-I      intronic chr2:101509381(+) A-I      intronic chr2:101509364(+) A-I      intronic chr2:101515779(+) A-I      intronic chr2:101477581(+) A-I      intronic chr2:101501611(+) A-I      intronic chr2:101518227(+) A-I      intronic chr2:101485458(+) A-I      intronic chr2:101524030(+) A-I      intronic chr2:101551598(+) A-I      intronic chr2:101497923(+) A-I      intronic chr2:101497915(+) A-I      intronic chr2:101487867(+) A-I      intronic chr2:101487886(+) A-I      intronic chr2:101490507(+) A-I      intronic chr2:101514665(+) A-I      intronic chr2:101467176(+) A-I      intronic chr2:101447708(+) A-I      intronic chr2:101501619(+) A-I      intronic chr2:101467159(+) A-I      intronic chr2:101570917(+) A-I      intronic chr2:101455014(+) A-I      intronic chr2:101490517(+) A-I      intronic chr2:101455748(+) A-I      intronic chr2:101455774(+) A-I      intronic chr2:101455811(+) A-I      intronic chr2:101490586(+) A-I      intronic chr2:101457628(+) A-I      intronic chr2:101457779(+) A-I      intronic chr2:101467137(+) A-I      intronic chr2:101490631(+) A-I      intronic chr2:101497914(+) A-I      intronic chr2:101490984(+) A-I      intronic chr2:101490667(+) A-I      intronic chr2:101490630(+) A-I      intronic chr2:101502193(+) A-I      intronic chr2:101502230(+) A-I      intronic chr2:101490522(+) A-I      intronic chr2:101569582(+) A-I      intronic chr2:101569583(+) A-I      intronic chr2:101572558(+) A-I      intronic chr2:101502266(+) A-I      intronic chr2:101502290(+) A-I      intronic chr2:101507440(+) A-I      intronic chr2:101509361(+) A-I      intronic chr2:101457789(+) A-I      intronic chr2:101457780(+) A-I      intronic chr2:101570931(+) A-I      intronic chr2:101570940(+) A-I      intronic chr2:101570941(+) A-I      intronic chr2:101502192(+) A-I      intronic chr2:101502236(+) A-I      intronic chr2:101464008(+) A-I      intronic chr2:101589388(+) A-I      intronic chr2:101572565(+) A-I      intronic chr2:101463912(+) A-I      intronic chr2:101596244(+) A-I      intronic chr2:101570998(+) A-I      intronic chr2:101570980(+) A-I      intronic chr2:101570974(+) A-I      intronic chr2:101568523(+) A-I      intronic chr2:101568520(+) A-I      intronic chr2:101463901(+) A-I      intronic chr2:101459583(+) A-I      intronic chr2:101459570(+) A-I      intronic chr2:101459560(+) A-I      intronic chr2:101568493(+) A-I      intronic chr2:101515811(+) A-I      intronic chr2:101515785(+) A-I      intronic chr2:101514627(+) A-I      intronic chr2:101514624(+) A-I      intronic chr2:101514605(+) A-I      intronic chr2:101495421(+) A-I      intronic chr2:101491132(+) A-I      intronic chr2:101487983(+) A-I      intronic chr2:101487976(+) A-I      intronic chr2:101486987(+) A-I      intronic chr2:101486970(+) A-I      intronic chr2:101486951(+) A-I      intronic chr2:101475645(+) A-I      intronic chr2:101467364(+) A-I      intronic chr2:101467340(+) A-I      intronic chr2:101467304(+) A-I      intronic chr2:101467300(+) A-I      intronic chr2:101467295(+) A-I      intronic chr2:101467294(+) A-I      intronic chr2:101467229(+) A-I      intronic chr2:101464094(+) A-I      intronic chr2:101464093(+) A-I      intronic chr2:101464039(+) A-I      intronic chr2:101572406(+) A-I      intronic chr2:101498953(+) A-I      intronic chr2:101454869(+) A-I      intronic chr2:101609599(+) A-I      intronic chr2:101572479(+) A-I      intronic chr2:101454809(+) A-I      intronic chr2:101502254(+) A-I      intronic chr2:101495585(+) A-I      intronic chr2:101579961(+) A-I      intronic chr2:101572428(+) A-I      intronic chr2:101570948(+) A-I      intronic chr2:101515946(+) A-I      intronic chr2:101498963(+) A-I      intronic chr2:101497962(+) A-I      intronic chr2:101579899(+) A-I      intronic chr2:101455721(+) A-I      intronic chr2:101467160(+) A-I      intronic chr2:101470527(+) A-I      intronic chr2:101493763(+) A-I      intronic chr2:101568961(+) A-I      intronic chr2:101502237(+) A-I      intronic chr2:101488067(+) A-I      intronic chr2:101467268(+) A-I      intronic chr2:101470459(+) A-I      intronic chr2:101499057(+) A-I      intronic chr2:101493806(+) A-I      intronic chr2:101609531(+) A-I      intronic chr2:101467336(+) A-I      intronic chr2:101470491(+) A-I      intronic chr2:101571469(+) A-I      intronic chr2:101571139(+) A-I      intronic chr2:101515947(+) A-I      intronic chr2:101569690(+) A-I      intronic chr2:101514599(+) A-I      intronic chr2:101455720(+) A-I      intronic chr2:101569717(+) A-I      intronic chr2:101493741(+) A-I      intronic chr2:101493698(+) A-I      intronic chr2:101571440(+) A-I      intronic chr2:101493673(+) A-I      intronic chr2:101609669(+) A-I      intronic chr2:101515865(+) A-I      intronic chr2:101502263(+) A-I      intronic chr2:101571006(+) A-I      intronic chr2:101491039(+) A-I      intronic chr2:101499059(+) A-I      intronic chr2:101447637(+) A-I      intronic chr2:101570920(+) A-I      intronic chr2:101570962(+) A-I      intronic chr2:101493839(+) A-I      intronic chr2:101514777(+) A-I      intronic chr2:101491045(+) A-I      intronic chr2:101467165(+) A-I      intronic chr2:101572484(+) A-I      intronic chr2:101570976(+) A-I      intronic chr2:101571432(+) A-I      intronic chr2:101493844(+) A-I      intronic chr2:101570975(+) A-I      intronic chr2:101499045(+) A-I      intronic chr2:101571520(+) A-I      intronic chr2:101495461(+) A-I      intronic chr2:101515919(+) A-I      intronic chr2:101467173(+) A-I      intronic chr2:101490949(+) A-I      intronic chr2:101571047(+) A-I      intronic chr2:101572425(+) A-I      intronic chr2:101493848(+) A-I      intronic chr2:101491044(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NPAS2	chr2:101493673(+) A-I intron -    15342557 chr2:101493698(+) A-I intron -    15342557 chr2:101493741(+) A-I intron -    15342557 chr2:101493743(+) A-I intron -    15342557 chr2:101493772(+) A-I intron -    15342557 chr2:101493780(+) A-I intron -    15342557 chr2:101493806(+) A-I intron -    15342557 chr2:101493839(+) A-I intron -    15342557 chr2:101493844(+) A-I intron -    15342557 chr2:101493848(+) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NPAS2	chr2:101587498-101587499(+) m6A CDS//exon       24284625 chr2:101591284-101591285(+) m6A CDS//exon       24284625 chr2:101591398-101591399(+) m6A CDS//exon       24284625//24981863 chr2:101594225-101594226(+) m6A CDS//exon       24284625 chr2:101598719-101598720(+) m6A CDS//exon       24284625 chr2:101598729-101598730(+) m6A CDS//exon       24284625 chr2:101598917-101598918(+) m6A exon//intron       24284625 chr2:101598938-101598939(+) m6A exon//intron       24284625 chr2:101606883-101606884(+) m6A CDS//exon//intron       24284625 chr2:101609824-101609825(+) m6A CDS//exon       24284625 chr2:101610939-101610940(+) m6A exon//intron       24284625 chr2:101610964-101610965(+) m6A exon//intron       24284625 chr2:101611898-101611899(+) m6A CDS//exon//intron       24284625 chr2:101611936-101611937(+) m6A CDS//exon//intron       24284625 chr2:101612065-101612066(+) m6A 3'UTR//exon//intron       24284625//24981863 chr2:101612128-101612129(+) m6A 3'UTR//exon//intron       24284625//24981863 chr2:101612133-101612134(+) m6A 3'UTR//exon//intron       24284625//24981863 chr2:101612169-101612170(+) m6A 3'UTR//exon//intron       24284625//24981863 chr2:101612287-101612288(+) m6A 3'UTR//exon       24284625 chr2:101612293-101612294(+) m6A 3'UTR//exon       24284625 chr2:101612700-101612701(+) m6A 3'UTR//exon       24284625//24981863 chr2:101612766-101612767(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535 chr2:101612773-101612774(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535 chr2:101612815-101612816(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942 chr2:101612867-101612868(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942 chr2:101612904-101612905(+) m6A 3'UTR//exon       24981863 chr2:101612917-101612918(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NPAS2	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: NPAS2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg