Basic Information:

  VIRBase ID:  

VHID00236909

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US33-5p:  MIMAT0001584          LAMC1:  NM_002293     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US33-5p	LAMC1
miRBase Accession/Entrez ID	MIMAT0001584	3915
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LAMB2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LAMC1	chr1:183081023(+) A-I      intronic chr1:183081027(+) A-I      intronic chr1:183081080(+) A-I      intronic chr1:183081083(+) A-I      intronic chr1:183082172(+) A-I      intronic chr1:183082190(+) A-I      intronic chr1:183087698(+) A-I      intronic chr1:183087708(+) A-I      intronic chr1:183087715(+) A-I      intronic chr1:183087728(+) A-I      intronic chr1:183087729(+) A-I      intronic chr1:183087730(+) A-I      intronic chr1:183082168(+) A-I      intronic chr1:183068681(+) A-I      intronic chr1:183082164(+) A-I      intronic chr1:183081012(+) A-I      intronic chr1:183081018(+) A-I      intronic chr1:183054202(+) A-I      intronic chr1:183023023(+) A-I      intronic chr1:183023029(+) A-I      intronic chr1:183050153(+) A-I      intronic chr1:183054646(+) A-I      intronic chr1:183024763(+) A-I      intronic chr1:183024771(+) A-I      intronic chr1:183088157(+) A-I      intronic chr1:183022835(+) A-I      intronic chr1:183024776(+) A-I      intronic chr1:183062204(+) A-I      intronic chr1:183088090(+) A-I      intronic chr1:183037822(+) A-I      intronic chr1:183023022(+) A-I      intronic chr1:183020042(+) A-I      intronic chr1:183024883(+) A-I      intronic chr1:183024893(+) A-I      intronic chr1:183019976(+) A-I      intronic chr1:183082256(+) A-I      intronic chr1:183082226(+) A-I      intronic chr1:183054176(+) A-I      intronic chr1:183036685(+) A-I      intronic chr1:183037808(+) A-I      intronic chr1:183081095(+) A-I      intronic chr1:183083386(+) A-I      intronic chr1:183036915(+) A-I      intronic chr1:183036723(+) A-I      intronic chr1:183083350(+) A-I      intronic chr1:183087596(+) A-I      intronic chr1:183082196(+) A-I      intronic chr1:183036724(+) A-I      intronic chr1:183036753(+) A-I      intronic chr1:183080897(+) A-I      intronic chr1:183000501(+) A-I      intronic chr1:183036763(+) A-I      intronic chr1:183054156(+) A-I      intronic chr1:183036801(+) A-I      intronic chr1:183019546(+) A-I      intronic chr1:183080405(+) A-I      intronic chr1:183054577(+) A-I      intronic chr1:183054556(+) A-I      intronic chr1:183054273(+) A-I      intronic chr1:183080308(+) A-I      intronic chr1:183054272(+) A-I      intronic chr1:183054201(+) A-I      intronic chr1:183054584(+) A-I      intronic chr1:183047975(+) A-I      intronic chr1:183088312(+) A-I      intronic chr1:183049219(+) A-I      intronic chr1:183037830(+) A-I      intronic chr1:183088266(+) A-I      intronic chr1:183083305(+) A-I      intronic chr1:183080907(+) A-I      intronic chr1:183023035(+) A-I      intronic chr1:183089124(+) A-I      intronic chr1:183050025(+) A-I      intronic chr1:183082350(+) A-I      intronic chr1:183087777(+) A-I      intronic chr1:183054231(+) A-I      intronic chr1:183100259(+) A-I      intronic chr1:183082367(+) A-I      intronic chr1:183000464(+) A-I      intronic chr1:183019932(+) A-I      intronic chr1:183088132(+) A-I      intronic chr1:183024677(+) A-I      intronic chr1:183048055(+) A-I      intronic chr1:183088114(+) A-I      intronic chr1:183028536(+) A-I      intronic chr1:183036766(+) A-I      intronic chr1:183088133(+) A-I      intronic chr1:183054637(+) A-I      intronic chr1:183104913(+) A-I      intronic chr1:183050586(+) A-I      intronic chr1:183082085(+) A-I      intronic chr1:183036899(+) A-I      intronic chr1:183036890(+) A-I      intronic chr1:183024253(+) A-I      intronic chr1:183083468(+) A-I      intronic chr1:183019975(+) A-I      intronic chr1:183080291(+) A-I      intronic chr1:183054205(+) A-I      intronic chr1:183081124(+) A-I      intronic chr1:183019879(+) A-I      intronic chr1:183054277(+) A-I      intronic chr1:183074381(+) A-I      intronic chr1:183036717(+) A-I      intronic chr1:183082394(+) A-I      intronic chr1:183050125(+) A-I      intronic chr1:183083226(+) A-I      intronic chr1:183082058(+) A-I      intronic chr1:183088092(+) A-I      intronic chr1:183089189(+) A-I      intronic chr1:183083467(+) A-I      intronic chr1:183048680(+) A-I      intronic chr1:183054292(+) A-I      intronic chr1:183080950(+) A-I      intronic chr1:183050196(+) A-I      intronic chr1:183049222(+) A-I      intronic chr1:183089105(+) A-I      intronic chr1:183050478(+) A-I      intronic chr1:183082207(+) A-I      intronic chr1:183050580(+) A-I      intronic chr1:183048626(+) A-I      intronic chr1:183024694(+) A-I      intronic chr1:183083327(+) A-I      intronic chr1:183087790(+) A-I      intronic chr1:183088234(+) A-I      intronic chr1:183024868(+) A-I      intronic chr1:183024836(+) A-I      intronic chr1:183029455(+) A-I      intronic chr1:183000459(+) A-I      intronic chr1:183089067(+) A-I      intronic chr1:183019968(+) A-I      intronic chr1:183108082(+) A-I      intronic chr1:183081094(+) A-I      intronic chr1:183080906(+) A-I      intronic chr1:183024826(+) A-I      intronic chr1:183024867(+) A-I      intronic chr1:183089177(+) A-I      intronic chr1:183088149(+) A-I      intronic chr1:183083309(+) A-I      intronic chr1:183081071(+) A-I      intronic chr1:183080296(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LAMC1	chr1:183000459(+) A-G intron -    22484847 chr1:183005231(+) C-T intron -    22484847 chr1:183019879(+) A-G intron -    22484847 chr1:183019968(+) A-G intron -    22484847 chr1:183019975(+) A-G intron -    22484847 chr1:183024253(+) A-G intron -    22484847 chr1:183024694(+) A-G intron -    22484847 chr1:183024826(+) A-G intron -    22484847 chr1:183024836(+) A-G intron -    22484847 chr1:183036717(+) A-G intron -    22484847 chr1:183036766(+) A-G intron -    22484847 chr1:183048680(+) A-G intron -    22484847 chr1:183049222(+) A-G intron -    22484847 chr1:183050025(+) A-G intron -    22484847 chr1:183050196(+) A-G intron -    22484847 chr1:183050478(+) A-G intron -    22484847 chr1:183050580(+) A-G intron -    22484847 chr1:183054231(+) A-G intron -    22484847 chr1:183054637(+) A-G intron -    22484847 chr1:183082058(+) A-G intron -    22484847 chr1:183083226(+) A-G intron -    22484847 chr1:183088092(+) A-G intron -    22484847 chr1:183088132(+) A-G intron -    22484847 chr1:183088133(+) A-G intron -    22484847 chr1:183088234(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LAMC1	chr1:182993061-182993062(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:182993088-182993089(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:182993214-182993215(+) m6A CDS       24284625//22575960 chr1:183065700-183065701(+) m6A 5'UTR//intron       24284625 chr1:183072594-183072595(+) m6A 5'UTR//CDS       24981863//26404942 chr1:183072612-183072613(+) m6A 5'UTR//CDS       24981863//26404942 chr1:183072629-183072630(+) m6A 5'UTR//CDS       24981863//26404942 chr1:183072709-183072710(+) Y 5'UTR//CDS       25219674 chr1:183079637-183079638(+) m6A 5'UTR//CDS       26404942 chr1:183079691-183079692(+) m6A CDS       26404942 chr1:183079711-183079712(+) m6A CDS       26404942 chr1:183093804-183093805(+) m6A CDS       22575960 chr1:183093832-183093833(+) m6A CDS       22575960 chr1:183099576-183099577(+) m6A CDS//exon       26404942 chr1:183099583-183099584(+) m6A CDS//exon       26404942 chr1:183099593-183099594(+) m6A CDS//exon       26404942 chr1:183099616-183099617(+) m6A CDS//exon       26404942 chr1:183099650-183099651(+) m6A CDS//exon       26404942 chr1:183100461-183100462(+) m6A CDS//exon       26404942 chr1:183100467-183100468(+) m6A CDS//exon       26404942 chr1:183101540-183101541(+) m6A CDS//exon       26404942 chr1:183101574-183101575(+) m6A CDS//exon       26404942 chr1:183101619-183101620(+) m6A CDS//exon       24981863//26404942 chr1:183101640-183101641(+) m6A CDS//exon       24981863//26404942 chr1:183101649-183101650(+) Gm CDS//exon       - chr1:183102546-183102547(+) m6A CDS//exon       24981863//26404942//27773535 chr1:183102557-183102558(+) m6A CDS//exon       24981863//26404942//27773535 chr1:183102579-183102580(+) m6A CDS//exon       24981863//26404942//27773535 chr1:183102668-183102669(+) m6A CDS//exon       24981863//26404942//27773535 chr1:183102676-183102677(+) m6A CDS       24981863//26404942//27773535 chr1:183103835-183103836(+) m6A CDS//exon       24981863//27773535 chr1:183103870-183103871(+) m6A CDS//exon       24981863//27773535 chr1:183103898-183103899(+) m6A CDS//exon       24981863//27773535 chr1:183103912-183103913(+) m6A CDS//exon       24981863//27773535 chr1:183103932-183103933(+) m6A CDS//exon       24981863//27773535 chr1:183103937-183103938(+) m6A CDS//exon       24981863//27773535 chr1:183104183-183104184(+) m6A CDS//exon       24981863//27773535 chr1:183105594-183105595(+) m6A CDS//exon       24209618//24981863//26404942 chr1:183105618-183105619(+) m6A CDS//exon       24209618//24981863//26404942 chr1:183105676-183105677(+) m6A CDS//exon       24209618//24981863//26404942//22575960 chr1:183106836-183106837(+) m6A CDS//exon       24209618//24981863//26404942 chr1:183106873-183106874(+) m6A CDS//exon       24209618//24981863//26404942 chr1:183106922-183106923(+) m6A CDS//exon       24209618//24981863 chr1:183106942-183106943(+) m6A CDS//exon       24209618//24981863 chr1:183107002-183107003(+) m6A exon//intron       24209618//24981863 chr1:183109587-183109588(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:183111686-183111687(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:183111703-183111704(+) Gm CDS       - chr1:183111722-183111723(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:183111815-183111816(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:183111848-183111849(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:183111866-183111867(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:183111877-183111878(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:183112014-183112015(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:183112054-183112055(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:183112093-183112094(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:183112109-183112110(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:183112295-183112296(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr1:183112442-183112443(+) m6A 3'UTR       24284625//22608085 chr1:183112520-183112521(+) m6A 3'UTR       24284625//24981863//22608085 chr1:183112574-183112575(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr1:183112623-183112624(+) m6A 3'UTR       24284625//24981863//26404942//22575960//22608085 chr1:183112690-183112691(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr1:183112698-183112699(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr1:183112725-183112726(+) m6A 3'UTR       24981863//26404942//22608085 chr1:183112782-183112783(+) m6A 3'UTR       24981863//26404942 chr1:183112819-183112820(+) m6A 3'UTR       26404942 chr1:183112844-183112845(+) m6A 3'UTR       26404942 chr1:183112871-183112872(+) m6A 3'UTR       26404942 chr1:183112882-183112883(+) m6A 3'UTR       26404942 chr1:183112923-183112924(+) m6A 3'UTR       26404942 chr1:183112989-183112990(+) m6A 3'UTR       26404942 chr1:183113050-183113051(+) m6A 3'UTR       26404942 chr1:183113830-183113831(+) m6A 3'UTR       26404942 chr1:183113935-183113936(+) m6A 3'UTR       26404942 chr1:183113959-183113960(+) m6A 3'UTR       26404942 chr1:183114218-183114219(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LAMC1	Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US33-5p
Interactor2: LAMC1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg