Basic Information:

  VIRBase ID:  

VHID00236158

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:  MIMAT0001583          MCOLN2:  NM_001330647     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-3p	MCOLN2
miRBase Accession/Entrez ID	MIMAT0001583	255231
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TRP-ML2//TRPML2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MCOLN2	chr1:85397480(-) A-I      intronic chr1:85411625(-) A-I      intronic chr1:85417762(-) A-I      intronic chr1:85411519(-) A-I      intronic chr1:85407093(-) A-I      intronic chr1:85406986(-) A-I      intronic chr1:85406974(-) A-I      intronic chr1:85398089(-) A-I      intronic chr1:85398084(-) A-I      intronic chr1:85398076(-) A-I      intronic chr1:85398066(-) A-I      intronic chr1:85397992(-) A-I      intronic chr1:85397980(-) A-I      intronic chr1:85453999(-) A-I      intronic chr1:85450629(-) A-I      intronic chr1:85450466(-) A-I      intronic chr1:85450460(-) A-I      intronic chr1:85449471(-) A-I      intronic chr1:85397505(-) A-I      intronic chr1:85449436(-) A-I      intronic chr1:85431818(-) A-I      intronic chr1:85431717(-) A-I      intronic chr1:85417694(-) A-I      intronic chr1:85417677(-) A-I      intronic chr1:85417661(-) A-I      intronic chr1:85411696(-) A-I      intronic chr1:85411602(-) A-I      intronic chr1:85449127(-) A-I      intronic chr1:85411601(-) A-I      intronic chr1:85411588(-) A-I      intronic chr1:85411551(-) A-I      intronic chr1:85411536(-) A-I      intronic chr1:85411521(-) A-I      intronic chr1:85438925(-) A-I      intronic chr1:85417687(-) A-I      intronic chr1:85449497(-) A-I      intronic chr1:85398075(-) A-I      intronic chr1:85398032(-) A-I      intronic chr1:85456561(-) A-I      intronic chr1:85407080(-) A-I      intronic chr1:85411541(-) A-I      intronic chr1:85438903(-) A-I      intronic chr1:85450591(-) A-I      intronic chr1:85391753(-) A-I      3'UTR chr1:85450569(-) A-I      intronic chr1:85391848(-) A-I      3'UTR chr1:85448514(-) A-I      intronic chr1:85450495(-) A-I      intronic chr1:85450486(-) A-I      intronic chr1:85411711(-) A-I      intronic chr1:85411633(-) A-I      intronic chr1:85456357(-) A-I      intronic chr1:85410031(-) A-I      intronic chr1:85398063(-) A-I      intronic chr1:85449072(-) A-I      intronic chr1:85455795(-) A-I      intronic chr1:85456344(-) A-I      intronic chr1:85406935(-) A-I      intronic chr1:85397579(-) A-I      intronic chr1:85397464(-) A-I      intronic chr1:85411669(-) A-I      intronic chr1:85398146(-) A-I      intronic chr1:85410097(-) A-I      intronic chr1:85397492(-) A-I      intronic chr1:85449092(-) A-I      intronic chr1:85398000(-) A-I      intronic chr1:85410209(-) A-I      intronic chr1:85397701(-) A-I      intronic chr1:85417718(-) A-I      intronic chr1:85417630(-) A-I      intronic chr1:85450550(-) A-I      intronic chr1:85408112(-) A-I      intronic chr1:85397552(-) A-I      intronic chr1:85406921(-) A-I      intronic chr1:85411568(-) A-I      intronic chr1:85410177(-) A-I      intronic chr1:85395846(-) A-I      intronic chr1:85397504(-) A-I      intronic chr1:85411610(-) A-I      intronic chr1:85439155(-) A-I      intronic chr1:85411659(-) A-I      intronic chr1:85411600(-) A-I      intronic chr1:85456398(-) A-I      intronic chr1:85449498(-) A-I      intronic chr1:85450566(-) A-I      intronic chr1:85398177(-) A-I      intronic chr1:85397487(-) A-I      intronic chr1:85411596(-) A-I      intronic chr1:85450428(-) A-I      intronic chr1:85407058(-) A-I      intronic chr1:85449630(-) A-I      intronic chr1:85407021(-) A-I      intronic chr1:85417483(-) A-I      intronic chr1:85407068(-) A-I      intronic chr1:85398073(-) A-I      intronic chr1:85417551(-) A-I      intronic chr1:85449028(-) A-I      intronic chr1:85397465(-) A-I      intronic chr1:85398059(-) A-I      intronic chr1:85454008(-) A-I      intronic chr1:85397565(-) A-I      intronic chr1:85450578(-) A-I      intronic chr1:85391553(-) A-I      3'UTR chr1:85455815(-) A-I      intronic chr1:85411611(-) A-I      intronic chr1:85449587(-) A-I      intronic chr1:85417686(-) A-I      intronic chr1:85397563(-) A-I      intronic chr1:85407098(-) A-I      intronic chr1:85411650(-) A-I      intronic chr1:85438975(-) A-I      intronic chr1:85417769(-) A-I      intronic chr1:85448604(-) A-I      intronic chr1:85411651(-) A-I      intronic chr1:85447994(-) A-I      intronic chr1:85411635(-) A-I      intronic chr1:85411492(-) A-I      intronic chr1:85407154(-) A-I      intronic chr1:85411609(-) A-I      intronic chr1:85450643(-) A-I      intronic chr1:85417707(-) A-I      intronic chr1:85398163(-) A-I      intronic chr1:85407178(-) A-I      intronic chr1:85450514(-) A-I      intronic chr1:85448070(-) A-I      intronic chr1:85391573(-) A-I      3'UTR chr1:85455723(-) A-I      intronic chr1:85407136(-) A-I      intronic chr1:85411605(-) A-I      intronic chr1:85398033(-) A-I      intronic chr1:85450583(-) A-I      intronic chr1:85411614(-) A-I      intronic chr1:85449248(-) A-I      intronic chr1:85410133(-) A-I      intronic chr1:85450475(-) A-I      intronic chr1:85449064(-) A-I      intronic chr1:85449553(-) A-I      intronic chr1:85397650(-) A-I      intronic chr1:85449224(-) A-I      intronic chr1:85397561(-) A-I      intronic chr1:85398168(-) A-I      intronic chr1:85398074(-) A-I      intronic chr1:85397624(-) A-I      intronic chr1:85397705(-) A-I      intronic chr1:85410134(-) A-I      intronic chr1:85398123(-) A-I      intronic chr1:85410130(-) A-I      intronic chr1:85397585(-) A-I      intronic chr1:85397543(-) A-I      intronic chr1:85417493(-) A-I      intronic chr1:85411608(-) A-I      intronic chr1:85398065(-) A-I      intronic chr1:85410153(-) A-I      intronic chr1:85391578(-) A-I      3'UTR chr1:85397639(-) A-I      intronic chr1:85397517(-) A-I      intronic chr1:85397491(-) A-I      intronic chr1:85448093(-) A-I      intronic chr1:85398152(-) A-I      intronic chr1:85405757(-) A-I      intronic chr1:85407174(-) A-I      intronic chr1:85449045(-) A-I      intronic chr1:85397622(-) A-I      intronic chr1:85397607(-) A-I      intronic chr1:85417593(-) A-I      intronic chr1:85398078(-) A-I      intronic chr1:85398128(-) A-I      intronic chr1:85410059(-) A-I      intronic chr1:85407142(-) A-I      intronic chr1:85397583(-) A-I      intronic chr1:85407117(-) A-I      intronic chr1:85449592(-) A-I      intronic chr1:85397560(-) A-I      intronic chr1:85449488(-) A-I      intronic chr1:85397479(-) A-I      intronic chr1:85417658(-) A-I      intronic chr1:85398068(-) A-I      intronic chr1:85398064(-) A-I      intronic chr1:85398133(-) A-I      intronic chr1:85449561(-) A-I      intronic chr1:85398062(-) A-I      intronic chr1:85417584(-) A-I      intronic chr1:85391752(-) A-I      3'UTR chr1:85393502(-) A-I      intronic chr1:85398039(-) A-I      intronic chr1:85411501(-) A-I      intronic chr1:85448497(-) A-I      intronic chr1:85450570(-) A-I      intronic chr1:85397629(-) A-I      intronic chr1:85453954(-) A-I      intronic chr1:85397984(-) A-I      intronic chr1:85448071(-) A-I      intronic chr1:85453934(-) A-I      intronic chr1:85397506(-) A-I      intronic chr1:85407133(-) A-I      intronic chr1:85412419(-) A-I      intronic chr1:85410129(-) A-I      intronic chr1:85410036(-) A-I      intronic chr1:85449629(-) A-I      intronic chr1:85411567(-) A-I      intronic chr1:85449427(-) A-I      intronic chr1:85448524(-) A-I      intronic chr1:85395749(-) A-I      intronic chr1:85456366(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MCOLN2	chr1:85391553(-) A-I exon 3'UTR    15258596 chr1:85391573(-) A-I exon 3'UTR    15258596 chr1:85391578(-) A-I exon 3'UTR    15258596 chr1:85391752(-) A-I exon 3'UTR    15258596 chr1:85391753(-) A-I exon 3'UTR    15258596 chr1:85391848(-) A-I exon 3'UTR    15258596   //16100382 chr1:85397464(-) A-I intron -    22327324 chr1:85397465(-) A-I intron -    22327324 chr1:85397491(-) A-I intron -    22327324 chr1:85397492(-) A-I intron -    22327324 chr1:85397506(-) A-I intron -    22327324 chr1:85397560(-) A-I intron -    22327324 chr1:85397561(-) A-I intron -    22327324 chr1:85397565(-) A-I intron -    22327324 chr1:85397701(-) A-I intron -    22327324 chr1:85398000(-) A-I intron -    22327324 chr1:85398062(-) A-I intron -    22327324 chr1:85398063(-) A-I intron -    22327324 chr1:85398065(-) A-I intron -    22327324 chr1:85398068(-) A-I intron -    22327324 chr1:85398070(-) A-I intron -    22327324 chr1:85398078(-) A-I intron -    22327324 chr1:85398168(-) A-I intron -    22327324 chr1:85407178(-) A-I intron -    22327324 chr1:85449427(-) A-I intron -    22327324 chr1:85449497(-) A-I intron -    22327324 chr1:85449553(-) A-I intron -    22327324 chr1:85447994(-) A-G intron -    22484847 chr1:85391748(-) G-A exon 3'UTR    22484847 chr1:85391753(-) A-T exon 3'UTR    22484847 chr1:85395735(-) G-C intron -    22484847 chr1:85395749(-) A-G intron -    22484847 chr1:85395846(-) A-G intron -    22484847 chr1:85397464(-) A-G intron -    22484847 chr1:85397465(-) A-G intron -    22484847 chr1:85397479(-) A-G intron -    22484847 chr1:85397487(-) A-G intron -    22484847 chr1:85397491(-) A-G intron -    22484847 chr1:85397492(-) A-G intron -    22484847 chr1:85397517(-) A-G intron -    22484847 chr1:85397543(-) A-G intron -    22484847 chr1:85397560(-) A-G intron -    22484847 chr1:85397561(-) A-G intron -    22484847 chr1:85397565(-) A-G intron -    22484847 chr1:85397583(-) A-G intron -    22484847 chr1:85397585(-) A-G intron -    22484847 chr1:85397607(-) A-G intron -    22484847 chr1:85397622(-) A-G intron -    22484847 chr1:85397624(-) A-G intron -    22484847 chr1:85397650(-) A-G intron -    22484847 chr1:85397701(-) A-G intron -    22484847 chr1:85397984(-) A-G intron -    22484847 chr1:85397989(-) A-C intron -    22484847 chr1:85398000(-) A-G intron -    22484847 chr1:85398032(-) A-G intron -    22484847 chr1:85398033(-) A-G intron -    22484847 chr1:85398059(-) A-G intron -    22484847 chr1:85398062(-) A-G intron -    22484847 chr1:85398063(-) A-G intron -    22484847 chr1:85398064(-) A-G intron -    22484847 chr1:85398065(-) A-G intron -    22484847 chr1:85398068(-) A-G intron -    22484847 chr1:85398073(-) A-G intron -    22484847 chr1:85398074(-) A-G intron -    22484847 chr1:85398075(-) A-G intron -    22484847 chr1:85398078(-) A-G intron -    22484847 chr1:85398123(-) A-G intron -    22484847 chr1:85398128(-) A-G intron -    22484847 chr1:85398133(-) A-G intron -    22484847 chr1:85398152(-) A-G intron -    22484847 chr1:85398163(-) A-G intron -    22484847 chr1:85398168(-) A-G intron -    22484847 chr1:85398177(-) A-G intron -    22484847 chr1:85406935(-) A-G intron -    22484847 chr1:85407021(-) A-G intron -    22484847 chr1:85407080(-) A-G intron -    22484847 chr1:85407098(-) A-G intron -    22484847 chr1:85407117(-) A-G intron -    22484847 chr1:85407133(-) A-G intron -    22484847 chr1:85407142(-) A-G intron -    22484847 chr1:85407154(-) A-G intron -    22484847 chr1:85407174(-) A-G intron -    22484847 chr1:85407178(-) A-G intron -    22484847 chr1:85410031(-) A-G intron -    22484847 chr1:85410059(-) A-G intron -    22484847 chr1:85410097(-) A-G intron -    22484847 chr1:85410129(-) A-G intron -    22484847 chr1:85410130(-) A-G intron -    22484847 chr1:85410133(-) A-G intron -    22484847 chr1:85410177(-) A-G intron -    22484847 chr1:85410209(-) A-G intron -    22484847 chr1:85411492(-) A-G intron -    22484847 chr1:85411501(-) A-G intron -    22484847 chr1:85411541(-) A-G intron -    22484847 chr1:85411567(-) A-G intron -    22484847 chr1:85411568(-) A-G intron -    22484847 chr1:85411592(-) G-A intron -    22484847 chr1:85411600(-) A-G intron -    22484847 chr1:85411608(-) A-G intron -    22484847 chr1:85411609(-) A-G intron -    22484847 chr1:85411611(-) A-G intron -    22484847 chr1:85411614(-) A-G intron -    22484847 chr1:85411635(-) A-G intron -    22484847 chr1:85411650(-) A-G intron -    22484847 chr1:85411651(-) A-G intron -    22484847 chr1:85411659(-) A-G intron -    22484847 chr1:85411711(-) A-G intron -    22484847 chr1:85417630(-) A-G intron -    22484847 chr1:85417686(-) A-G intron -    22484847 chr1:85417687(-) A-G intron -    22484847 chr1:85417707(-) A-G intron -    22484847 chr1:85417718(-) A-G intron -    22484847 chr1:85419235(-) T-G intron -    22484847 chr1:85435253(-) G-T intron -    22484847 chr1:85436215(-) A-T intron -    22484847 chr1:85437709(-) C-G intron -    22484847 chr1:85438925(-) A-G intron -    22484847 chr1:85438975(-) A-G intron -    22484847 chr1:85442278(-) C-T intron -    22484847 chr1:85448093(-) A-G intron -    22484847 chr1:85448604(-) A-G intron -    22484847 chr1:85449028(-) A-G intron -    22484847 chr1:85449045(-) A-G intron -    22484847 chr1:85449064(-) A-G intron -    22484847 chr1:85449072(-) A-G intron -    22484847 chr1:85449092(-) A-G intron -    22484847 chr1:85449427(-) A-G intron -    22484847 chr1:85449488(-) A-G intron -    22484847 chr1:85449497(-) A-G intron -    22484847 chr1:85449498(-) A-G intron -    22484847 chr1:85449553(-) A-G intron -    22484847 chr1:85449561(-) A-G intron -    22484847 chr1:85449587(-) A-G intron -    22484847 chr1:85449629(-) A-G intron -    22484847 chr1:85450428(-) A-G intron -    22484847 chr1:85450475(-) A-G intron -    22484847 chr1:85450486(-) A-G intron -    22484847 chr1:85450495(-) A-G intron -    22484847 chr1:85450514(-) A-G intron -    22484847 chr1:85450550(-) A-G intron -    22484847 chr1:85450566(-) A-G intron -    22484847 chr1:85450569(-) A-G intron -    22484847 chr1:85450570(-) A-G intron -    22484847 chr1:85450578(-) A-G intron -    22484847 chr1:85450583(-) A-G intron -    22484847 chr1:85450591(-) A-G intron -    22484847 chr1:85450643(-) A-G intron -    22484847 chr1:85452191(-) C-T intron -    22484847 chr1:85453934(-) A-G intron -    22484847 chr1:85453954(-) A-G intron -    22484847 chr1:85454008(-) A-G intron -    22484847 chr1:85455815(-) A-G intron -    22484847 chr1:85456344(-) A-G intron -    22484847 chr1:85456366(-) A-G intron -    22484847 chr1:85459608(-) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MCOLN2	chr1:85391347-85391348(-) m6A 3'UTR       28052920 chr1:85391532-85391533(-) m6A 3'UTR       24284625//28052920//22608085 chr1:85391552-85391553(-) m6A 3'UTR       24284625//28052920//22608085 chr1:85392169-85392170(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085 chr1:85392189-85392190(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085 chr1:85392242-85392243(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//22608085 chr1:85392293-85392294(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//22608085 chr1:85392309-85392310(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//22608085 chr1:85462676-85462677(-) m6A 5'UTR//exon//intron       27773536 chr1:85462766-85462767(-) m6A 5'UTR//exon       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MCOLN2	Exosome Blood     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-US25-2-3p	Irinotecan       60838

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-3p
Interactor2: MCOLN2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid
Support Database	RepTar//VmiReg