Basic Information:

  VIRBase ID:  

VHID00235975

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:  MIMAT0001583          TTC39B:  NM_001168339     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-3p	TTC39B
miRBase Accession/Entrez ID	MIMAT0001583	158219
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C9orf52

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TTC39B	chr9:15303726(-) A-I      intronic chr9:15303706(-) A-I      intronic chr9:15303703(-) A-I      intronic chr9:15257612(-) A-I      intronic chr9:15257585(-) A-I      intronic chr9:15242481(-) A-I      intronic chr9:15178489(-) A-I      intronic chr9:15262329(-) A-I      intronic chr9:15302103(-) A-I      intronic chr9:15301707(-) A-I      intronic chr9:15301590(-) A-I      intronic chr9:15301561(-) A-I      intronic chr9:15178490(-) A-I      intronic chr9:15261289(-) A-I      intronic chr9:15262324(-) A-I      intronic chr9:15301508(-) A-I      intronic chr9:15257549(-) A-I      intronic chr9:15178547(-) A-I      intronic chr9:15178535(-) A-I      intronic chr9:15178516(-) A-I      intronic chr9:15301509(-) A-I      intronic chr9:15178326(-) A-I      intronic chr9:15178134(-) A-I      intronic chr9:15178070(-) A-I      intronic chr9:15178006(-) A-I      intronic chr9:15257605(-) A-I      intronic chr9:15303665(-) A-I      intronic chr9:15303811(-) A-I      intronic chr9:15257609(-) A-I      intronic chr9:15303738(-) A-I      intronic chr9:15257641(-) A-I      intronic chr9:15302567(-) A-I      intronic chr9:15302612(-) A-I      intronic chr9:15303431(-) A-I      intronic chr9:15302104(-) A-I      intronic chr9:15303445(-) A-I      intronic chr9:15302158(-) A-I      intronic chr9:15302116(-) A-I      intronic chr9:15302117(-) A-I      intronic chr9:15302118(-) A-I      intronic chr9:15302141(-) A-I      intronic chr9:15303794(-) A-I      intronic chr9:15261374(-) A-I      intronic chr9:15242323(-) A-I      intronic chr9:15261259(-) A-I      intronic chr9:15281813(-) A-I      intronic chr9:15303057(-) A-I      intronic chr9:15301691(-) A-I      intronic chr9:15302212(-) A-I      intronic chr9:15178430(-) A-I      intronic chr9:15303812(-) A-I      intronic chr9:15296923(-) A-I      intronic chr9:15178452(-) A-I      intronic chr9:15302261(-) A-I      intronic chr9:15178312(-) A-I      intronic chr9:15303544(-) A-I      intronic chr9:15301589(-) A-I      intronic chr9:15303471(-) A-I      intronic chr9:15303466(-) A-I      intronic chr9:15303534(-) A-I      intronic chr9:15178511(-) A-I      intronic chr9:15178551(-) A-I      intronic chr9:15261232(-) A-I      intronic chr9:15202588(-) A-I      intronic chr9:15178462(-) A-I      intronic chr9:15303508(-) A-I      intronic chr9:15178521(-) A-I      intronic chr9:15301710(-) A-I      intronic chr9:15302720(-) A-I      intronic chr9:15202624(-) A-I      intronic chr9:15215433(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TTC39B	chr9:15298396(-) A-I intron -    21960545 chr9:15301632(-) A-I intron -    21960545 chr9:15215433(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TTC39B	chr9:15171469-15171470(-) m6A 3'UTR       24981863//27773535//22608085 chr9:15171506-15171507(-) m6A 3'UTR       24981863//27773535//22608085 chr9:15171512-15171513(-) m6A 3'UTR       24981863//27773535//22608085 chr9:15171523-15171524(-) m6A 3'UTR       24981863//27773535//22608085 chr9:15171536-15171537(-) m6A 3'UTR       24981863//27773535 chr9:15171909-15171910(-) m6A 3'UTR//exon       24981863//22608085 chr9:15171917-15171918(-) m6A 3'UTR//exon       24981863//22608085 chr9:15172010-15172011(-) m6A 3'UTR//exon       24981863//22608085 chr9:15172031-15172032(-) m6A CDS//exon       24981863//22608085 chr9:15172073-15172074(-) m6A CDS//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TTC39B	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-US25-2-3p	Irinotecan       60838

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-3p
Interactor2: TTC39B

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg