Detail Information

Basic Information:


  VIRBase ID:  

VHID00235834

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:           UBLCP1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-3p UBLCP1
miRBase
Accession/Entrez ID
MIMAT0001583 134510
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CPUB1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UBLCP1
chr5:158703246(+) A-I      intronic
chr5:158702485(+) A-I      intronic
chr5:158703175(+) A-I      intronic
chr5:158702627(+) A-I      intronic
chr5:158703176(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UBLCP1
chr5:158703176(+) A-G intron -    22484847
chr5:158705738(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UBLCP1
chr5:158690253-158690254(+) m6A 5'UTR       24981863
chr5:158710259-158710260(+) m6A CDS//exon       24981863
chr5:158710266-158710267(+) m6A CDS//exon       24981863
chr5:158711932-158711933(+) m6A CDS//exon       26404942//22608085
chr5:158711984-158711985(+) m6A 3'UTR//exon       24981863//26404942//22608085
chr5:158712025-158712026(+) m6A 3'UTR//exon       24981863//26404942//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate UBLCP1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-US25-2-3p
Irinotecan       60838

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-3p
Interactor2: UBLCP1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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