Basic Information:

  VIRBase ID:  

VHID00235216

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:  MIMAT0001583          SH3TC2:  NM_024577     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-3p	SH3TC2
miRBase Accession/Entrez ID	MIMAT0001583	79628
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMT4C//MNMN

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SH3TC2	chr5:148398227(-) A-I      intronic chr5:148403283(-) A-I      intronic chr5:148403274(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SH3TC2	chr5:148383689-148383690(-) m6A 3'UTR//intron       24981863//22575960 chr5:148383724-148383725(-) m6A 3'UTR//intron       24981863//22575960 chr5:148383797-148383798(-) m6A 3'UTR//intron       24209618 chr5:148383828-148383829(-) m6A 3'UTR//intron       24209618 chr5:148383853-148383854(-) m6A 3'UTR//intron       24209618 chr5:148384017-148384018(-) m6A 3'UTR//intron       24209618//24981863 chr5:148406495-148406496(-) m6A 3'UTR//CDS       - chr5:148406551-148406552(-) m6A 3'UTR//CDS       - chr5:148406570-148406571(-) m6A 3'UTR//CDS       - chr5:148406604-148406605(-) m6A 3'UTR//CDS       24209618 chr5:148406703-148406704(-) m6A 3'UTR//CDS       24284625//24209618//22575960 chr5:148406736-148406737(-) m6A 3'UTR//CDS       24284625//24209618//22575960 chr5:148406765-148406766(-) m6A 3'UTR//CDS       24284625//24209618//22575960 chr5:148406809-148406810(-) m6A 3'UTR//CDS       24284625//24209618//22575960 chr5:148407458-148407459(-) m6A 3'UTR//CDS       24284625//24209618 chr5:148407539-148407540(-) m6A 3'UTR//CDS       24284625//24209618//24981863 chr5:148407551-148407552(-) m6A 3'UTR//CDS       24284625//24209618//24981863 chr5:148407603-148407604(-) m6A 3'UTR//CDS       24209618//24981863 chr5:148407665-148407666(-) m6A 3'UTR//CDS       24209618//24981863 chr5:148407897-148407898(-) m6A 3'UTR//CDS       24209618//24981863 chr5:148407930-148407931(-) m6A 3'UTR//CDS       24284625//24209618//24981863 chr5:148407941-148407942(-) m6A 3'UTR//CDS       24284625//24209618//24981863 chr5:148407984-148407985(-) m6A 3'UTR//CDS//exon       24284625//24981863 chr5:148408023-148408024(-) m6A 3'UTR//CDS//exon       24284625 chr5:148408043-148408044(-) m6A 3'UTR//CDS//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SH3TC2	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-US25-2-3p	Irinotecan       60838

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-3p
Interactor2: SH3TC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg