Basic Information:

  VIRBase ID:  

VHID00235018

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:  MIMAT0001583          C6orf47:  NM_021184     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-3p	C6orf47
miRBase Accession/Entrez ID	MIMAT0001583	57827
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	D6S53E//G4//NG34

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C6orf47	chr6:31626277-31626278(-) m6A 3'UTR       24284625//27773535 chr6:31626429-31626430(-) m6A 3'UTR       24284625//24981863//27773535 chr6:31626457-31626458(-) m6A 3'UTR       24284625//27773535 chr6:31626461-31626462(-) m6A 3'UTR       24284625 chr6:31626476-31626477(-) m6A 3'UTR       24284625 chr6:31626496-31626497(-) m6A 3'UTR       24284625 chr6:31626523-31626524(-) m6A 3'UTR       24284625 chr6:31626660-31626661(-) m6A 3'UTR       24284625//24209618//27773535 chr6:31626686-31626687(-) m6A 3'UTR       24284625//24981863//27773535 chr6:31626691-31626692(-) m6A 3'UTR       24284625//24981863//27773535 chr6:31626736-31626737(-) m6A 3'UTR       24284625//24981863//27773535 chr6:31626756-31626757(-) m6A 3'UTR       24284625//24981863//27773535 chr6:31626858-31626859(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr6:31627085-31627086(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr6:31627104-31627105(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr6:31627241-31627242(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627283-31627284(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627319-31627320(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627343-31627344(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627382-31627383(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627409-31627410(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627443-31627444(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627508-31627509(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627545-31627546(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627552-31627553(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627579-31627580(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627626-31627627(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627640-31627641(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627670-31627671(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:31627808-31627809(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr6:31627847-31627848(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr6:31627917-31627918(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31627933-31627934(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31628040-31628041(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31628087-31628088(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31628117-31628118(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31628177-31628178(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31628202-31628203(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:31628271-31628272(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:31628396-31628397(-) m6A 5'UTR       24284625//24209618//24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C6orf47	Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-US25-2-3p	Irinotecan       60838

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-3p
Interactor2: C6orf47

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg