Basic Information:

  VIRBase ID:  

VHID00234737

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:  MIMAT0001583          CDV3:  NM_001282763     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-3p	CDV3
miRBase Accession/Entrez ID	MIMAT0001583	55573
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	H41

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDV3	chr3:133300075(+) A-I      intronic chr3:133298476(+) A-I      intronic chr3:133298511(+) A-I      intronic chr3:133300112(+) A-I      intronic chr3:133298523(+) A-I      intronic chr3:133298530(+) A-I      intronic chr3:133298531(+) A-I      intronic chr3:133298554(+) A-I      intronic chr3:133298566(+) A-I      intronic chr3:133298602(+) A-I      intronic chr3:133299318(+) A-I      intronic chr3:133299337(+) A-I      intronic chr3:133299351(+) A-I      intronic chr3:133299407(+) A-I      intronic chr3:133299478(+) A-I      intronic chr3:133298517(+) A-I      intronic chr3:133299501(+) A-I      intronic chr3:133299977(+) A-I      intronic chr3:133299487(+) A-I      intronic chr3:133299399(+) A-I      intronic chr3:133299292(+) A-I      intronic chr3:133298598(+) A-I      intronic chr3:133300068(+) A-I      intronic chr3:133300106(+) A-I      intronic chr3:133300076(+) A-I      intronic chr3:133298460(+) A-I      intronic chr3:133299998(+) A-I      intronic chr3:133304264(+) A-I      intronic chr3:133300007(+) A-I      intronic chr3:133298576(+) A-I      intronic chr3:133300148(+) A-I      intronic chr3:133300162(+) A-I      intronic chr3:133300117(+) A-I      intronic chr3:133302667(+) A-I      intronic chr3:133299452(+) A-I      intronic chr3:133298711(+) A-I      intronic chr3:133301094(+) A-I      intronic chr3:133299450(+) A-I      intronic chr3:133301153(+) A-I      intronic chr3:133300178(+) A-I      intronic chr3:133299646(+) A-I      intronic chr3:133299971(+) A-I      intronic chr3:133300080(+) A-I      intronic chr3:133300177(+) A-I      intronic chr3:133299659(+) A-I      intronic chr3:133298458(+) A-I      intronic chr3:133299467(+) A-I      intronic chr3:133300025(+) A-I      intronic chr3:133300026(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CDV3	chr3:133296208(+) C-T intron -    22484847 chr3:133298458(+) A-G intron -    22484847 chr3:133298493(+) A-G intron -    22484847 chr3:133298501(+) A-G intron -    22484847 chr3:133298576(+) A-G intron -    22484847 chr3:133298598(+) A-G intron -    22484847 chr3:133299292(+) A-G intron -    22484847 chr3:133299399(+) A-G intron -    22484847 chr3:133299452(+) A-G intron -    22484847 chr3:133299470(+) C-T intron -    22484847 chr3:133299971(+) A-G intron -    22484847 chr3:133299972(+) A-G intron -    22484847 chr3:133299998(+) A-G intron -    22484847 chr3:133300076(+) A-G intron -    22484847 chr3:133300106(+) A-G intron -    22484847 chr3:133300117(+) A-G intron -    22484847 chr3:133300148(+) A-G intron -    22484847 chr3:133301094(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDV3	chr3:133292697-133292698(+) m6A 5'UTR       24209618//27773536 chr3:133292916-133292917(+) m6A CDS       24209618//25456834//24981863//27773536//22575960 chr3:133292937-133292938(+) m6A CDS       24209618//25456834//24981863//27773536//22575960 chr3:133292945-133292946(+) m1A CDS       26863196//26863410 chr3:133292948-133292949(+) Am CDS       - chr3:133293053-133293054(+) m6A CDS//intron       24209618//25456834//24981863//27371828//27773536//22575960 chr3:133293074-133293075(+) m6A CDS//intron       24209618//25456834//24981863//27371828//27773536//22575960 chr3:133293300-133293301(+) m6A 5'UTR//intron       24209618//24981863//27773535//27773536//22575960 chr3:133293571-133293572(+) m6A 5'UTR//intron       24209618//24981863 chr3:133302859-133302860(+) m1A CDS       26863196 chr3:133302878-133302879(+) m6A CDS       24209618//24981863//27773535 chr3:133302904-133302905(+) m1A CDS       26863196 chr3:133302957-133302958(+) m6A CDS       24981863//27773535 chr3:133305414-133305415(+) m6A CDS       24981863//27773535//22575960 chr3:133305422-133305423(+) m6A CDS       24981863//27773535//22575960 chr3:133305483-133305484(+) m6A CDS       27773535//22575960 chr3:133305494-133305495(+) m6A CDS       27773535//22575960 chr3:133306072-133306073(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr3:133306206-133306207(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//22575960//22608085 chr3:133306218-133306219(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//22575960//22608085 chr3:133306256-133306257(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr3:133306691-133306692(+) m6A 3'UTR//intron       27773535//22608085 chr3:133306775-133306776(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr3:133306810-133306811(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr3:133306823-133306824(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr3:133306834-133306835(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr3:133306925-133306926(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:133306982-133306983(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:133306994-133306995(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:133307102-133307103(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:133307149-133307150(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:133307155-133307156(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:133307249-133307250(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr3:133307308-133307309(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr3:133307474-133307475(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr3:133307484-133307485(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr3:133307501-133307502(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr3:133307548-133307549(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr3:133307590-133307591(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr3:133308553-133308554(+) m6A 3'UTR       22575960 chr3:133308586-133308587(+) m6A 3'UTR       24284625//27773535//22575960 chr3:133308722-133308723(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr3:133308729-133308730(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr3:133308750-133308751(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr3:133308777-133308778(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:133308843-133308844(+) m6A 3'UTR       24284625//27773535//22608085 chr3:133308898-133308899(+) m6A 3'UTR       24284625//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDV3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-US25-2-3p	Irinotecan       60838

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-3p
Interactor2: CDV3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg