Detail Information

Basic Information:


  VIRBase ID:  

VHID00234684

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:           MRPS10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-3p MRPS10
miRBase
Accession/Entrez ID		 MIMAT0001583 55173
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - MRP-S10//PNAS-122

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MRPS10
chr6:42180865(-) A-I      intronic
chr6:42177367(-) A-I      intronic
chr6:42182947(-) A-I      intronic
chr6:42184386(-) A-I      intronic
chr6:42184489(-) A-I      intronic
chr6:42183012(-) A-I      intronic
chr6:42183210(-) A-I      intronic
chr6:42184401(-) A-I      intronic
chr6:42177301(-) A-I      intronic
chr6:42176871(-) A-I      intronic
chr6:42176847(-) A-I      intronic
chr6:42183329(-) A-I      intronic
chr6:42184033(-) A-I      intronic
chr6:42184383(-) A-I      intronic
chr6:42177320(-) A-I      intronic
chr6:42174962(-) A-I      3'UTR
chr6:42175163(-) A-I      3'UTR
chr6:42175153(-) A-I      3'UTR
chr6:42175222(-) A-I      3'UTR
chr6:42175127(-) A-I      3'UTR
chr6:42175253(-) A-I      3'UTR
chr6:42175130(-) A-I      3'UTR
chr6:42175135(-) A-I      3'UTR
chr6:42175173(-) A-I      3'UTR
chr6:42175164(-) A-I      3'UTR
chr6:42175025(-) A-I      3'UTR
chr6:42175136(-) A-I      3'UTR
chr6:42175030(-) A-I      3'UTR
chr6:42175108(-) A-I      3'UTR
chr6:42175230(-) A-I      3'UTR
chr6:42175116(-) A-I      3'UTR
chr6:42183873(-) A-I      intronic
chr6:42183342(-) A-I      intronic
chr6:42184369(-) A-I      intronic
chr6:42184522(-) A-I      intronic
chr6:42183939(-) A-I      intronic
chr6:42177374(-) A-I      intronic
chr6:42183267(-) A-I      intronic
chr6:42183378(-) A-I      intronic
chr6:42183878(-) A-I      intronic
chr6:42175034(-) A-I      3'UTR
chr6:42175142(-) A-I      3'UTR
chr6:42175084(-) A-I      3'UTR
chr6:42175204(-) A-I      3'UTR
chr6:42175056(-) A-I      3'UTR
chr6:42175124(-) A-I      3'UTR
chr6:42175098(-) A-I      3'UTR
chr6:42175195(-) A-I      3'UTR
chr6:42175128(-) A-I      3'UTR
chr6:42175137(-) A-I      3'UTR
chr6:42175249(-) A-I      3'UTR
chr6:42175133(-) A-I      3'UTR
chr6:42174994(-) A-I      3'UTR
chr6:42175057(-) A-I      3'UTR
chr6:42175129(-) A-I      3'UTR
chr6:42183439(-) A-I      intronic
chr6:42183303(-) A-I      intronic
chr6:42183019(-) A-I      intronic
chr6:42183886(-) A-I      intronic
chr6:42177480(-) A-I      intronic
chr6:42176801(-) A-I      intronic
chr6:42183981(-) A-I      intronic
chr6:42183958(-) A-I      intronic
chr6:42177022(-) A-I      intronic
chr6:42183213(-) A-I      intronic
chr6:42184292(-) A-I      intronic
chr6:42183191(-) A-I      intronic
chr6:42183854(-) A-I      intronic
chr6:42183944(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MRPS10
chr6:42175186(-) A-I exon 3'UTR    21960545
chr6:42175186(-) A-G exon 3'UTR    22484847
chr6:42177022(-) A-G intron -    22484847
chr6:42183096(-) A-G intron -    22484847
chr6:42183342(-) A-G intron -    22484847
chr6:42183957(-) A-G intron -    22484847
chr6:42184454(-) A-G intron -    22484847
chr6:42184466(-) A-G intron -    22484847
chr6:42184522(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MRPS10
chr6:42175055-42175056(-) m6A 3'UTR       24981863
chr6:42175117-42175118(-) m6A 3'UTR       24981863
chr6:42175330-42175331(-) m6A 3'UTR       27773535
chr6:42175443-42175444(-) m6A 3'UTR       27773535
chr6:42175484-42175485(-) m6A 3'UTR       27773535
chr6:42175510-42175511(-) m6A 3'UTR       27773535
chr6:42176061-42176062(-) m6A CDS       24981863//27773535
chr6:42176086-42176087(-) m6A CDS       24981863//27773535
chr6:42176098-42176099(-) m6A CDS       24981863//27773535
chr6:42176629-42176630(-) m6A CDS       24981863//27773535
chr6:42176679-42176680(-) m6A CDS       27773535
chr6:42178245-42178246(-) m6A CDS       27773535
chr6:42178278-42178279(-) Y CDS       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MRPS10
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-US25-2-3p
Irinotecan       60838

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-3p
Interactor2: MRPS10

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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