Detail Information

Basic Information:


  VIRBase ID:  

VHID00233928

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:           NUDT21:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-3p NUDT21
miRBase
Accession/Entrez ID		 MIMAT0001583 11051
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CFIM25//CPSF5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NUDT21
chr16:56469204(-) A-I      intronic
chr16:56469213(-) A-I      intronic
chr16:56469214(-) A-I      intronic
chr16:56469244(-) A-I      intronic
chr16:56477292(-) A-I      intronic
chr16:56469395(-) A-I      intronic
chr16:56477301(-) A-I      intronic
chr16:56469088(-) A-I      intronic
chr16:56469200(-) A-I      intronic
chr16:56469282(-) A-I      intronic
chr16:56469394(-) A-I      intronic
chr16:56469396(-) A-I      intronic
chr16:56469624(-) A-I      intronic
chr16:56475426(-) A-I      intronic
chr16:56477118(-) A-I      intronic
chr16:56477119(-) A-I      intronic
chr16:56477127(-) A-I      intronic
chr16:56477217(-) A-I      intronic
chr16:56477221(-) A-I      intronic
chr16:56479089(-) A-I      intronic
chr16:56478894(-) A-I      intronic
chr16:56469212(-) A-I      intronic
chr16:56477261(-) A-I      intronic
chr16:56474980(-) A-I      intronic
chr16:56469173(-) A-I      intronic
chr16:56478973(-) A-I      intronic
chr16:56479009(-) A-I      intronic
chr16:56478879(-) A-I      intronic
chr16:56479074(-) A-I      intronic
chr16:56478851(-) A-I      intronic
chr16:56478933(-) A-I      intronic
chr16:56478885(-) A-I      intronic
chr16:56474941(-) A-I      intronic
chr16:56478080(-) A-I      intronic
chr16:56469108(-) A-I      intronic
chr16:56478823(-) A-I      intronic
chr16:56469174(-) A-I      intronic
chr16:56479039(-) A-I      intronic
chr16:56469474(-) A-I      intronic
chr16:56478930(-) A-I      intronic
chr16:56469210(-) A-I      intronic
chr16:56478928(-) A-I      intronic
chr16:56478084(-) A-I      intronic
chr16:56477961(-) A-I      intronic
chr16:56478384(-) A-I      intronic
chr16:56475281(-) A-I      intronic
chr16:56479057(-) A-I      intronic
chr16:56478839(-) A-I      intronic
chr16:56475245(-) A-I      intronic
chr16:56478884(-) A-I      intronic
chr16:56469203(-) A-I      intronic
chr16:56477227(-) A-I      intronic
chr16:56469471(-) A-I      intronic
chr16:56469217(-) A-I      intronic
chr16:56469382(-) A-I      intronic
chr16:56474815(-) A-I      intronic
chr16:56477359(-) A-I      intronic
chr16:56479013(-) A-I      intronic
chr16:56475277(-) A-I      intronic
chr16:56479049(-) A-I      intronic
chr16:56478196(-) A-I      intronic
chr16:56477295(-) A-I      intronic
chr16:56478194(-) A-I      intronic
chr16:56469490(-) A-I      intronic
chr16:56469205(-) A-I      intronic
chr16:56477262(-) A-I      intronic
chr16:56469298(-) A-I      intronic
chr16:56477306(-) A-I      intronic
chr16:56477365(-) A-I      intronic
chr16:56476012(-) A-I      intronic
chr16:56477381(-) A-I      intronic
chr16:56478852(-) A-I      intronic
chr16:56477942(-) A-I      intronic
chr16:56476066(-) A-I      intronic
chr16:56469299(-) A-I      intronic
chr16:56469065(-) A-I      intronic
chr16:56474840(-) A-I      intronic
chr16:56475440(-) A-I      intronic
chr16:56478972(-) A-I      intronic
chr16:56469489(-) A-I      intronic
chr16:56467888(-) A-I      intronic
chr16:56478984(-) A-I      intronic
chr16:56475956(-) A-I      intronic
chr16:56478924(-) A-I      intronic
chr16:56478974(-) A-I      intronic
chr16:56478144(-) A-I      intronic
chr16:56477358(-) A-I      intronic
chr16:56477226(-) A-I      intronic
chr16:56469211(-) A-I      intronic
chr16:56475260(-) A-I      intronic
chr16:56469078(-) A-I      intronic
chr16:56469380(-) A-I      intronic
chr16:56476021(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NUDT21
chr16:56478823(-) A-I intron -    22028664
chr16:56478839(-) A-I intron -    22028664
chr16:56478851(-) A-I intron -    22028664
chr16:56478852(-) A-I intron -    22028664
chr16:56478879(-) A-I intron -    22028664
chr16:56478885(-) A-I intron -    22028664
chr16:56478894(-) A-I intron -    22028664
chr16:56478924(-) A-I intron -    22028664
chr16:56478928(-) A-I intron -    22028664
chr16:56478930(-) A-I intron -    22028664
chr16:56478933(-) A-I intron -    22028664
chr16:56478972(-) A-I intron -    22028664
chr16:56478973(-) A-I intron -    22028664
chr16:56478974(-) A-I intron -    22028664
chr16:56478984(-) A-I intron -    22028664
chr16:56479009(-) A-I intron -    22028664
chr16:56479013(-) A-I intron -    22028664
chr16:56479039(-) A-I intron -    22028664
chr16:56479074(-) A-I intron -    22028664
chr16:56479089(-) A-I intron -    22028664
chr16:56464388(-) C-T exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NUDT21
chr16:56465647-56465648(-) m6A 3'UTR       27773535
chr16:56465687-56465688(-) m6A 3'UTR       27773535
chr16:56465706-56465707(-) m6A 3'UTR       27773535
chr16:56465972-56465973(-) m6A 3'UTR       27773535
chr16:56466022-56466023(-) m6A 3'UTR       27773535
chr16:56466033-56466034(-) m6A 3'UTR       27773535
chr16:56466040-56466041(-) m6A 3'UTR       27773535
chr16:56466106-56466107(-) m6A 3'UTR       -
chr16:56466164-56466165(-) m6A 3'UTR       -
chr16:56473080-56473081(-) m6A exon//intron       24981863
chr16:56473112-56473113(-) m6A exon//intron       24981863
chr16:56473123-56473124(-) m6A exon//intron       24981863
chr16:56473154-56473155(-) m6A exon//intron       24981863
chr16:56473179-56473180(-) m6A exon//intron       24981863
chr16:56481716-56481717(-) m6A CDS//exon       26404942
chr16:56481782-56481783(-) m6A CDS//exon       26404942//27773535
chr16:56481847-56481848(-) m6A 5'UTR//CDS//exon       26404942//27773535
chr16:56485083-56485084(-) m6A CDS//exon//intron       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NUDT21
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-US25-2-3p
Irinotecan       60838

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-3p
Interactor2: NUDT21

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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