Detail Information

Basic Information:


  VIRBase ID:  

VHID00233847

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:           TM9SF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-3p TM9SF1
miRBase
Accession/Entrez ID
MIMAT0001583 10548
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - HMP70//MP70

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TM9SF1
chr14:24662646(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TM9SF1
chr14:24658566-24658567(-) m6A 3'UTR       24284625//24981863//22608085
chr14:24658604-24658605(-) m6A 3'UTR       24284625//24981863//22608085
chr14:24658624-24658625(-) m6A 3'UTR//CDS       24284625//24981863//22608085
chr14:24659430-24659431(-) m6A 3'UTR//intron       24981863
chr14:24659666-24659667(-) m6A 3'UTR//CDS//intron       24284625//27773535
chr14:24659705-24659706(-) m6A CDS//intron       24284625//27773535
chr14:24661005-24661006(-) m6A exon//intron       24284625
chr14:24661017-24661018(-) m6A exon//intron       24284625
chr14:24661040-24661041(-) m6A exon//intron       24284625//27773535
chr14:24661210-24661211(-) m6A exon//intron       27773535
chr14:24661223-24661224(-) m6A exon//intron       24284625//27773535
chr14:24661233-24661234(-) m6A exon//intron       24284625//27773535
chr14:24661271-24661272(-) m6A exon//intron       24284625//24981863//27773535//22608085
chr14:24661325-24661326(-) m6A exon//intron       24284625//24981863//27773535
chr14:24661340-24661341(-) m6A exon//intron       24284625//27773535
chr14:24661369-24661370(-) m6A exon//intron       24284625//27773535
chr14:24661405-24661406(-) m6A CDS//exon//intron       24284625
chr14:24662000-24662001(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr14:24662129-24662130(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr14:24662189-24662190(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr14:24662305-24662306(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:24662329-24662330(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:24662339-24662340(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:24662346-24662347(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:24662445-24662446(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr14:24663968-24663969(-) m6A 5'UTR//CDS//intron       24284625//24209618//26404942//27773535//22575960//22608085
chr14:24664053-24664054(-) m6A CDS//intron       24284625//24209618//26404942//27773535//22575960
chr14:24664075-24664076(-) m6A CDS//intron       24284625//24209618//26404942//27773535//22575960
chr14:24664208-24664209(-) m6A CDS//intron       24284625//27773535//27371828
chr14:24664245-24664246(-) m6A 5'UTR//intron       27773535//27371828
chr14:24664317-24664318(-) m6A 5'UTR//intron       27773536
chr14:24664506-24664507(-) m6A 5'UTR//intron       27773536
chr14:24664520-24664521(-) m6A 5'UTR//intron       27773536
chr14:24664544-24664545(-) m6A 5'UTR//intron       24981863//27773536
chr14:24664626-24664627(-) m6A 5'UTR//intron       24981863//26404942//27773536
chr14:24664856-24664857(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TM9SF1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-US25-2-3p
Irinotecan       60838

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-3p
Interactor2: TM9SF1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...