Detail Information

Basic Information:


  VIRBase ID:  

VHID00233810

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-3p:           TNIP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-3p TNIP1
miRBase
Accession/Entrez ID		 MIMAT0001583 10318
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - ABIN-1//NAF1//nip40-1//VAN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TNIP1
chr5:150417783(-) A-I      intronic
chr5:150437043(-) A-I      intronic
chr5:150454512(-) A-I      intronic
chr5:150441314(-) A-I      intronic
chr5:150432935(-) A-I      intronic
chr5:150423214(-) A-I      intronic
chr5:150452700(-) A-I      intronic
chr5:150432848(-) A-I      intronic
chr5:150452706(-) A-I      intronic
chr5:150423870(-) A-I      intronic
chr5:150454508(-) A-I      intronic
chr5:150433998(-) A-I      intronic
chr5:150454517(-) A-I      intronic
chr5:150423236(-) A-I      intronic
chr5:150432844(-) A-I      intronic
chr5:150423106(-) A-I      intronic
chr5:150423124(-) A-I      intronic
chr5:150423132(-) A-I      intronic
chr5:150423170(-) A-I      intronic
chr5:150423212(-) A-I      intronic
chr5:150454467(-) A-I      intronic
chr5:150432917(-) A-I      intronic
chr5:150437657(-) A-I      intronic
chr5:150432815(-) A-I      intronic
chr5:150423254(-) A-I      intronic
chr5:150423259(-) A-I      intronic
chr5:150423310(-) A-I      intronic
chr5:150423753(-) A-I      intronic
chr5:150423799(-) A-I      intronic
chr5:150423849(-) A-I      intronic
chr5:150423898(-) A-I      intronic
chr5:150424729(-) A-I      intronic
chr5:150424749(-) A-I      intronic
chr5:150424824(-) A-I      intronic
chr5:150424828(-) A-I      intronic
chr5:150434096(-) A-I      intronic
chr5:150434120(-) A-I      intronic
chr5:150437064(-) A-I      intronic
chr5:150437170(-) A-I      intronic
chr5:150437754(-) A-I      intronic
chr5:150432767(-) A-I      intronic
chr5:150423201(-) A-I      intronic
chr5:150423115(-) A-I      intronic
chr5:150433985(-) A-I      intronic
chr5:150437777(-) A-I      intronic
chr5:150434025(-) A-I      intronic
chr5:150437661(-) A-I      intronic
chr5:150453361(-) A-I      intronic
chr5:150437115(-) A-I      intronic
chr5:150423672(-) A-I      intronic
chr5:150423758(-) A-I      intronic
chr5:150424788(-) A-I      intronic
chr5:150454503(-) A-I      intronic
chr5:150437129(-) A-I      intronic
chr5:150423118(-) A-I      intronic
chr5:150424844(-) A-I      intronic
chr5:150434007(-) A-I      intronic
chr5:150433997(-) A-I      intronic
chr5:150423335(-) A-I      intronic
chr5:150432809(-) A-I      intronic
chr5:150432846(-) A-I      intronic
chr5:150454507(-) A-I      intronic
chr5:150437658(-) A-I      intronic
chr5:150454422(-) A-I      intronic
chr5:150437194(-) A-I      intronic
chr5:150454412(-) A-I      intronic
chr5:150423219(-) A-I      intronic
chr5:150423073(-) A-I      intronic
chr5:150433963(-) A-I      intronic
chr5:150432819(-) A-I      intronic
chr5:150437655(-) A-I      intronic
chr5:150424883(-) A-I      intronic
chr5:150437215(-) A-I      intronic
chr5:150454477(-) A-I      intronic
chr5:150437619(-) A-I      intronic
chr5:150423187(-) A-I      intronic
chr5:150423654(-) A-I      intronic
chr5:150423298(-) A-I      intronic
chr5:150424826(-) A-I      intronic
chr5:150434122(-) A-I      intronic
chr5:150437178(-) A-I      intronic
chr5:150423882(-) A-I      intronic
chr5:150434070(-) A-I      intronic
chr5:150454585(-) A-I      intronic
chr5:150424736(-) A-I      intronic
chr5:150423875(-) A-I      intronic
chr5:150434024(-) A-I      intronic
chr5:150452566(-) A-I      intronic
chr5:150434149(-) A-I      intronic
chr5:150452591(-) A-I      intronic
chr5:150437112(-) A-I      intronic
chr5:150434127(-) A-I      intronic
chr5:150423289(-) A-I      intronic
chr5:150423267(-) A-I      intronic
chr5:150434076(-) A-I      intronic
chr5:150423735(-) A-I      intronic
chr5:150423151(-) A-I      intronic
chr5:150437121(-) A-I      intronic
chr5:150434085(-) A-I      intronic
chr5:150432847(-) A-I      intronic
chr5:150437620(-) A-I      intronic
chr5:150423114(-) A-I      intronic
chr5:150437659(-) A-I      intronic
chr5:150434180(-) A-I      intronic
chr5:150423845(-) A-I      intronic
chr5:150453360(-) A-I      intronic
chr5:150434188(-) A-I      intronic
chr5:150452736(-) A-I      intronic
chr5:150454455(-) A-I      intronic
chr5:150432944(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TNIP1
chr5:150423224(-) A-I intron -    22327324
chr5:150423305(-) A-I intron -    22327324
chr5:150423802(-) A-I intron -    22327324
chr5:150423882(-) A-I intron -    22327324
chr5:150413045(-) G-C intron -    21725310
chr5:150412688(-) G-T intron -    22484847
chr5:150423073(-) A-G intron -    22484847
chr5:150423092(-) G-A intron -    22484847
chr5:150423115(-) A-G intron -    22484847
chr5:150423118(-) A-G intron -    22484847
chr5:150423151(-) A-G intron -    22484847
chr5:150423153(-) A-G intron -    22484847
chr5:150423217(-) A-G intron -    22484847
chr5:150423219(-) A-G intron -    22484847
chr5:150423267(-) A-G intron -    22484847
chr5:150423274(-) A-G intron -    22484847
chr5:150423289(-) A-G intron -    22484847
chr5:150423298(-) A-G intron -    22484847
chr5:150423305(-) A-G intron -    22484847
chr5:150423335(-) A-G intron -    22484847
chr5:150423336(-) A-G intron -    22484847
chr5:150423672(-) A-G intron -    22484847
chr5:150423735(-) A-G intron -    22484847
chr5:150423758(-) A-G intron -    22484847
chr5:150423798(-) A-G intron -    22484847
chr5:150423802(-) A-G intron -    22484847
chr5:150423804(-) A-G intron -    22484847
chr5:150423840(-) A-G intron -    22484847
chr5:150423875(-) A-G intron -    22484847
chr5:150423882(-) A-G intron -    22484847
chr5:150424736(-) A-G intron -    22484847
chr5:150424742(-) A-G intron -    22484847
chr5:150424788(-) A-G intron -    22484847
chr5:150424844(-) A-G intron -    22484847
chr5:150424852(-) A-G intron -    22484847
chr5:150432767(-) A-G intron -    22484847
chr5:150432809(-) A-G intron -    22484847
chr5:150432831(-) A-G intron -    22484847
chr5:150433963(-) A-G intron -    22484847
chr5:150433985(-) A-G intron -    22484847
chr5:150433997(-) A-G intron -    22484847
chr5:150434007(-) A-G intron -    22484847
chr5:150434024(-) A-G intron -    22484847
chr5:150434025(-) A-G intron -    22484847
chr5:150434050(-) A-G intron -    22484847
chr5:150434070(-) A-G intron -    22484847
chr5:150434076(-) A-G intron -    22484847
chr5:150434085(-) A-G intron -    22484847
chr5:150434116(-) A-G intron -    22484847
chr5:150434122(-) A-G intron -    22484847
chr5:150434180(-) A-G intron -    22484847
chr5:150437112(-) A-G intron -    22484847
chr5:150437115(-) A-G intron -    22484847
chr5:150437121(-) A-G intron -    22484847
chr5:150437129(-) A-G intron -    22484847
chr5:150437130(-) A-G intron -    22484847
chr5:150437178(-) A-G intron -    22484847
chr5:150437194(-) A-G intron -    22484847
chr5:150437584(-) G-A intron -    22484847
chr5:150437591(-) G-A intron -    22484847
chr5:150437606(-) A-G intron -    22484847
chr5:150437619(-) A-G intron -    22484847
chr5:150437620(-) A-G intron -    22484847
chr5:150437651(-) A-G intron -    22484847
chr5:150437655(-) A-G intron -    22484847
chr5:150437658(-) A-G intron -    22484847
chr5:150437659(-) A-G intron -    22484847
chr5:150437660(-) A-G intron -    22484847
chr5:150437661(-) A-G intron -    22484847
chr5:150437777(-) A-G intron -    22484847
chr5:150441057(-) T-A intron -    22484847
chr5:150452566(-) A-G intron -    22484847
chr5:150452591(-) A-G intron -    22484847
chr5:150452671(-) A-G intron -    22484847
chr5:150452697(-) G-A intron -    22484847
chr5:150452745(-) T-A intron -    22484847
chr5:150452787(-) C-T intron -    22484847
chr5:150453360(-) A-G intron -    22484847
chr5:150453361(-) A-G intron -    22484847
chr5:150454422(-) A-G intron -    22484847
chr5:150454441(-) A-G intron -    22484847
chr5:150454477(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TNIP1
chr5:150409531-150409532(-) m6A 3'UTR       24981863//28052920//27773535//22608085
chr5:150409615-150409616(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr5:150409622-150409623(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr5:150409772-150409773(-) m6A 3'UTR//intron       24284625//24981863//26404942
chr5:150409837-150409838(-) m6A 3'UTR//intron       24284625//24981863//26404942
chr5:150409922-150409923(-) m6A 3'UTR//intron       24284625//25456834//24981863//27371828//22608085
chr5:150409938-150409939(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr5:150410044-150410045(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:150410104-150410105(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22608085
chr5:150410121-150410122(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22608085
chr5:150410206-150410207(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22608085
chr5:150410271-150410272(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27371828
chr5:150411669-150411670(-) m6A exon//intron       24284625
chr5:150411851-150411852(-) m6A 3'UTR//CDS//exon//intron       27773535
chr5:150411876-150411877(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr5:150412223-150412224(-) m6A exon//intron       27773535
chr5:150412285-150412286(-) m6A exon//intron       27773535
chr5:150412297-150412298(-) m6A exon//intron       27773535
chr5:150413077-150413078(-) m6A 3'UTR//intron       24209618
chr5:150413116-150413117(-) m6A CDS//intron       24209618
chr5:150413250-150413251(-) m6A CDS//exon//intron       24284625//24209618//27773535//27371828
chr5:150413321-150413322(-) m6A CDS//exon//intron       24284625//24209618//28052920//27773535//27371828
chr5:150414583-150414584(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828
chr5:150415189-150415190(-) m1A CDS//exon//intron       26863196
chr5:150415207-150415208(-) Gm CDS//exon//intron       -
chr5:150415248-150415249(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr5:150416356-150416357(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr5:150416389-150416390(-) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//27371828//27773536//22575960
chr5:150416454-150416455(-) m6A CDS//exon//intron       24284625//24209618//26404942//27773535//27371828//27773536//22575960
chr5:150416923-150416924(-) m6A exon//intron       -
chr5:150416943-150416944(-) m6A exon//intron       -
chr5:150422496-150422497(-) m6A CDS//exon//intron       24284625//24209618//27773535//22575960
chr5:150422508-150422509(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960
chr5:150425569-150425570(-) m6A exon//intron       24284625//24209618//24981863//27773535//27773536
chr5:150425617-150425618(-) m6A exon//intron       24284625//24209618//27773535
chr5:150425687-150425688(-) m6A exon//intron       -
chr5:150429393-150429394(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr5:150429416-150429417(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr5:150429428-150429429(-) Am CDS//exon       -
chr5:150431754-150431755(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr5:150436426-150436427(-) m6A CDS       24284625//27773536
chr5:150436457-150436458(-) m6A CDS       24284625//27773536
chr5:150441766-150441767(-) m6A CDS       24284625//27773535//27371828//27773536
chr5:150443238-150443239(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chr5:150444641-150444642(-) m6A CDS//intron       27773535//27371828//27773536
chr5:150457982-150457983(-) m6A exon//intron       27371828//27773536
chr5:150459703-150459704(-) m6A exon//intron       27371828//27773536
chr5:150459916-150459917(-) m6A 5'UTR//exon//intron       24981863//27773536
chr5:150460633-150460634(-) m6A 5'UTR//intron       24981863//27773536
chr5:150460738-150460739(-) m6A intron       27773536
chr5:150460756-150460757(-) m6A intron       27773536
chr5:150466693-150466694(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TNIP1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-US25-2-3p
Irinotecan       60838

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-3p
Interactor2: TNIP1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid
Support Database RepTar//VmiReg

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