Basic Information:

  VIRBase ID:  

VHID00231707

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:  MIMAT0001582          CCDC130:  NM_001320569     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-5p	CCDC130
miRBase Accession/Entrez ID	MIMAT0001582	81576
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC130	chr19:13862053(+) A-I      intronic chr19:13862046(+) A-I      intronic chr19:13862044(+) A-I      intronic chr19:13861594(+) A-I      intronic chr19:13861590(+) A-I      intronic chr19:13871835(+) A-I      intronic chr19:13861565(+) A-I      intronic chr19:13859918(+) A-I      intronic chr19:13862070(+) A-I      intronic chr19:13859898(+) A-I      intronic chr19:13859992(+) A-I      intronic chr19:13859998(+) A-I      intronic chr19:13860018(+) A-I      intronic chr19:13860510(+) A-I      intronic chr19:13860551(+) A-I      intronic chr19:13861167(+) A-I      intronic chr19:13861302(+) A-I      intronic chr19:13861473(+) A-I      intronic chr19:13861497(+) A-I      intronic chr19:13861976(+) A-I      intronic chr19:13862127(+) A-I      intronic chr19:13862838(+) A-I      intronic chr19:13870349(+) A-I      intronic chr19:13870506(+) A-I      intronic chr19:13870517(+) A-I      intronic chr19:13870522(+) A-I      intronic chr19:13870611(+) A-I      intronic chr19:13870667(+) A-I      intronic chr19:13870692(+) A-I      intronic chr19:13870889(+) A-I      intronic chr19:13870921(+) A-I      intronic chr19:13871565(+) A-I      intronic chr19:13871663(+) A-I      intronic chr19:13871836(+) A-I      intronic chr19:13871965(+) A-I      intronic chr19:13871974(+) A-I      intronic chr19:13871977(+) A-I      intronic chr19:13871982(+) A-I      intronic chr19:13872008(+) A-I      intronic chr19:13872014(+) A-I      intronic chr19:13872098(+) A-I      intronic chr19:13872102(+) A-I      intronic chr19:13872105(+) A-I      intronic chr19:13872117(+) A-I      intronic chr19:13872146(+) A-I      intronic chr19:13872156(+) A-I      intronic chr19:13872161(+) A-I      intronic chr19:13872166(+) A-I      intronic chr19:13872456(+) A-I      intronic chr19:13872592(+) A-I      intronic chr19:13872607(+) A-I      intronic chr19:13872638(+) A-I      intronic chr19:13872674(+) A-I      intronic chr19:13872677(+) A-I      intronic chr19:13872809(+) A-I      intronic chr19:13872851(+) A-I      intronic chr19:13872954(+) A-I      intronic chr19:13872991(+) A-I      intronic chr19:13863709(+) A-I      intronic chr19:13861970(+) A-I      intronic chr19:13870574(+) A-I      intronic chr19:13861241(+) A-I      intronic chr19:13871461(+) A-I      intronic chr19:13871763(+) A-I      intronic chr19:13870581(+) A-I      intronic chr19:13871766(+) A-I      intronic chr19:13859843(+) A-I      intronic chr19:13860092(+) A-I      intronic chr19:13870642(+) A-I      intronic chr19:13870354(+) A-I      intronic chr19:13870815(+) A-I      intronic chr19:13871944(+) A-I      intronic chr19:13871686(+) A-I      intronic chr19:13870323(+) A-I      intronic chr19:13872180(+) A-I      intronic chr19:13871748(+) A-I      intronic chr19:13872085(+) A-I      intronic chr19:13872440(+) A-I      intronic chr19:13859959(+) A-I      intronic chr19:13872958(+) A-I      intronic chr19:13871682(+) A-I      intronic chr19:13870686(+) A-I      intronic chr19:13861206(+) A-I      intronic chr19:13859947(+) A-I      intronic chr19:13870786(+) A-I      intronic chr19:13861569(+) A-I      intronic chr19:13872116(+) A-I      intronic chr19:13870826(+) A-I      intronic chr19:13859911(+) A-I      intronic chr19:13871792(+) A-I      intronic chr19:13870314(+) A-I      intronic chr19:13872178(+) A-I      intronic chr19:13870546(+) A-I      intronic chr19:13861170(+) A-I      intronic chr19:13870729(+) A-I      intronic chr19:13871481(+) A-I      intronic chr19:13871938(+) A-I      intronic chr19:13872812(+) A-I      intronic chr19:13870322(+) A-I      intronic chr19:13862054(+) A-I      intronic chr19:13872758(+) A-I      intronic chr19:13872183(+) A-I      intronic chr19:13870969(+) A-I      intronic chr19:13870542(+) A-I      intronic chr19:13871683(+) A-I      intronic chr19:13860490(+) A-I      intronic chr19:13870541(+) A-I      intronic chr19:13872858(+) A-I      intronic chr19:13872617(+) A-I      intronic chr19:13871439(+) A-I      intronic chr19:13871851(+) A-I      intronic chr19:13872690(+) A-I      intronic chr19:13870806(+) A-I      intronic chr19:13871932(+) A-I      intronic chr19:13870491(+) A-I      intronic chr19:13871553(+) A-I      intronic chr19:13871664(+) A-I      intronic chr19:13872898(+) A-I      intronic chr19:13870362(+) A-I      intronic chr19:13862021(+) A-I      intronic chr19:13870712(+) A-I      intronic chr19:13871549(+) A-I      intronic chr19:13861607(+) A-I      intronic chr19:13872006(+) A-I      intronic chr19:13872748(+) A-I      intronic chr19:13870950(+) A-I      intronic chr19:13871712(+) A-I      intronic chr19:13862223(+) A-I      intronic chr19:13872671(+) A-I      intronic chr19:13870648(+) A-I      intronic chr19:13871732(+) A-I      intronic chr19:13870304(+) A-I      intronic chr19:13870465(+) A-I      intronic chr19:13859957(+) A-I      intronic chr19:13871939(+) A-I      intronic chr19:13861488(+) A-I      intronic chr19:13872921(+) A-I      intronic chr19:13871845(+) A-I      intronic chr19:13870941(+) A-I      intronic chr19:13872929(+) A-I      intronic chr19:13871777(+) A-I      intronic chr19:13872081(+) A-I      intronic chr19:13861317(+) A-I      intronic chr19:13872137(+) A-I      intronic chr19:13870462(+) A-I      intronic chr19:13871783(+) A-I      intronic chr19:13871012(+) A-I      intronic chr19:13872994(+) A-I      intronic chr19:13870676(+) A-I      intronic chr19:13861529(+) A-I      intronic chr19:13872433(+) A-I      intronic chr19:13871533(+) A-I      intronic chr19:13872602(+) A-I      intronic chr19:13870868(+) A-I      intronic chr19:13872818(+) A-I      intronic chr19:13861492(+) A-I      intronic chr19:13872882(+) A-I      intronic chr19:13871021(+) A-I      intronic chr19:13862108(+) A-I      intronic chr19:13871536(+) A-I      intronic chr19:13871857(+) A-I      intronic chr19:13872950(+) A-I      intronic chr19:13870691(+) A-I      intronic chr19:13861555(+) A-I      intronic chr19:13870924(+) A-I      intronic chr19:13871500(+) A-I      intronic chr19:13861182(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC130	chr19:13870306(+) A-I intron -    22327324 chr19:13870362(+) A-I intron -    22327324 chr19:13870491(+) A-I intron -    22327324 chr19:13870741(+) A-I intron -    22327324 chr19:13870826(+) A-I intron -    22327324 chr19:13870868(+) A-I intron -    22327324 chr19:13871000(+) A-I intron -    21960545   //22327324 chr19:13871461(+) A-I intron -    22327324 chr19:13871486(+) A-I intron -    22327324 chr19:13871012(+) A-I intron -    21960545 chr19:13861970(+) A-G intron -    22484847 chr19:13870304(+) A-G intron -    22484847 chr19:13870306(+) A-G intron -    22484847 chr19:13870322(+) A-G intron -    22484847 chr19:13870354(+) A-G intron -    22484847 chr19:13870362(+) A-G intron -    22484847 chr19:13870491(+) A-G intron -    22484847 chr19:13870542(+) A-G intron -    22484847 chr19:13870571(+) A-G intron -    22484847 chr19:13870574(+) A-G intron -    22484847 chr19:13870729(+) A-G intron -    22484847 chr19:13870741(+) A-G intron -    22484847 chr19:13870806(+) A-G intron -    22484847 chr19:13870826(+) A-G intron -    22484847 chr19:13870867(+) A-G intron -    22484847 chr19:13870868(+) A-G intron -    22484847 chr19:13870880(+) A-G intron -    22484847 chr19:13870924(+) A-G intron -    22484847 chr19:13870969(+) A-G intron -    22484847 chr19:13871000(+) A-G intron -    22484847 chr19:13871439(+) A-G intron -    22484847 chr19:13871461(+) A-G intron -    22484847 chr19:13871481(+) A-G intron -    22484847 chr19:13871486(+) A-G intron -    22484847 chr19:13871500(+) A-G intron -    22484847 chr19:13871547(+) A-G intron -    22484847 chr19:13871687(+) A-G intron -    22484847 chr19:13871944(+) A-G intron -    22484847 chr19:13872075(+) A-G intron -    22484847 chr19:13872137(+) A-G intron -    22484847 chr19:13872141(+) A-G intron -    22484847 chr19:13872148(+) A-G intron -    22484847 chr19:13872183(+) A-G intron -    22484847 chr19:13872184(+) A-G intron -    22484847 chr19:13872934(+) A-G intron -    22484847 chr19:13872950(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC130	chr19:13842610-13842611(+) m6A 5'UTR//exon       24981863 chr19:13842675-13842676(+) m6A 5'UTR//exon       24981863 chr19:13862518-13862519(+) m6A 5'UTR//exon//intron       24284625//24981863 chr19:13862548-13862549(+) m6A 5'UTR//exon//intron       24284625 chr19:13862602-13862603(+) m6A 5'UTR//exon//intron       24284625 chr19:13869791-13869792(+) m6A CDS//exon       - chr19:13869800-13869801(+) m6A CDS//exon       - chr19:13870129-13870130(+) m6A 3'UTR//CDS//intron       - chr19:13872365-13872366(+) m6A exon//intron       24284625//25456834//24981863 chr19:13873149-13873150(+) m6A CDS//exon       24284625//25456834 chr19:13873248-13873249(+) m6A CDS//exon       24284625//25456834 chr19:13873279-13873280(+) m6A 3'UTR//intron       24284625 chr19:13873330-13873331(+) m6A 3'UTR//intron       - chr19:13873358-13873359(+) m6A 3'UTR//intron       - chr19:13873412-13873413(+) m6A 3'UTR//CDS//exon       24284625 chr19:13873422-13873423(+) m6A 3'UTR//CDS//exon       24284625 chr19:13873432-13873433(+) m6A 3'UTR//CDS//exon       24284625 chr19:13873531-13873532(+) m6A 3'UTR//CDS//exon       24284625 chr19:13873565-13873566(+) m6A 3'UTR//CDS//exon       24284625//25456834 chr19:13873644-13873645(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873673-13873674(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873694-13873695(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:13873708-13873709(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:13873717-13873718(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:13873763-13873764(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:13873856-13873857(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873900-13873901(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873905-13873906(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873924-13873925(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873948-13873949(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13873955-13873956(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13874009-13874010(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:13874075-13874076(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr19:13874091-13874092(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US25-2-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	CCDC130	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-5p
Interactor2: CCDC130

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg