Basic Information:

  VIRBase ID:  

VHID00231620

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:  MIMAT0001582          JMJD4:  NM_023007     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-5p	JMJD4
miRBase Accession/Entrez ID	MIMAT0001582	65094
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	JMJD4	chr1:227919198-227919199(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr1:227919227-227919228(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr1:227919268-227919269(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr1:227919434-227919435(-) m6A 3'UTR//exon       24284625//25456834//27773536//22575960//22608085 chr1:227919501-227919502(-) m6A 3'UTR//exon       24284625//25456834//27773536//22608085 chr1:227919592-227919593(-) m6A 3'UTR//exon       24284625//27773536 chr1:227919713-227919714(-) m6A 3'UTR//exon       24284625 chr1:227919843-227919844(-) m6A 3'UTR//exon       24284625//22608085 chr1:227919910-227919911(-) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr1:227920018-227920019(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr1:227920171-227920172(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:227920248-227920249(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:227920612-227920613(-) m6A CDS//exon//intron       24284625//25456834//27773536//22575960//22608085 chr1:227920818-227920819(-) m6A exon//intron       24284625//25456834//27773536//22575960 chr1:227920850-227920851(-) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr1:227921205-227921206(-) m6A CDS//exon       24284625//27773536 chr1:227921274-227921275(-) m6A CDS//exon       24284625//27773536 chr1:227921317-227921318(-) m1A CDS//exon       26863410 chr1:227921404-227921405(-) m6A exon//intron       24284625 chr1:227921484-227921485(-) m6A exon//intron       27773536//22608085 chr1:227921554-227921555(-) m6A exon//intron       24284625//27773536//22608085 chr1:227921581-227921582(-) m6A exon//intron       24284625//22608085 chr1:227921730-227921731(-) m6A CDS//exon       24284625//25456834//22608085 chr1:227921913-227921914(-) m6A exon//intron       24284625//25456834//22608085 chr1:227921927-227921928(-) m6A exon//intron       24284625//25456834//22608085 chr1:227922011-227922012(-) m6A exon//intron       24284625//22608085 chr1:227922046-227922047(-) m6A exon//intron       24284625//22608085 chr1:227922366-227922367(-) m6A CDS//exon       24284625//24981863//22608085 chr1:227922438-227922439(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:227922465-227922466(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:227922492-227922493(-) m6A CDS//exon       24284625//24981863//27773535//27773536//22608085 chr1:227922718-227922719(-) m6A CDS//exon       24284625//24981863//27773535//27773536//22608085 chr1:227922969-227922970(-) m6A CDS       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US25-2-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	JMJD4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-5p
Interactor2: JMJD4

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg