Detail Information

Basic Information:


  VIRBase ID:  

VHID00231449

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:           SAMD4B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-5p SAMD4B
miRBase
Accession/Entrez ID		 MIMAT0001582 55095
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - Smaug2//SMGB

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SAMD4B
chr19:39858314(+) A-I      intronic
chr19:39857023(+) A-I      intronic
chr19:39857017(+) A-I      intronic
chr19:39856746(+) A-I      intronic
chr19:39856791(+) A-I      intronic
chr19:39858332(+) A-I      intronic
chr19:39856990(+) A-I      intronic
chr19:39856964(+) A-I      intronic
chr19:39856800(+) A-I      intronic
chr19:39856795(+) A-I      intronic
chr19:39856968(+) A-I      intronic
chr19:39856996(+) A-I      intronic
chr19:39858739(+) A-I      intronic
chr19:39858608(+) A-I      intronic
chr19:39858605(+) A-I      intronic
chr19:39858583(+) A-I      intronic
chr19:39849152(+) A-I      intronic
chr19:39850637(+) A-I      intronic
chr19:39850638(+) A-I      intronic
chr19:39850648(+) A-I      intronic
chr19:39852099(+) A-I      intronic
chr19:39855974(+) A-I      intronic
chr19:39856182(+) A-I      intronic
chr19:39858243(+) A-I      intronic
chr19:39858288(+) A-I      intronic
chr19:39858278(+) A-I      intronic
chr19:39869364(+) A-I      intronic
chr19:39858804(+) A-I      intronic
chr19:39858803(+) A-I      intronic
chr19:39852028(+) A-I      intronic
chr19:39848715(+) A-I      intronic
chr19:39849126(+) A-I      intronic
chr19:39858275(+) A-I      intronic
chr19:39849142(+) A-I      intronic
chr19:39849150(+) A-I      intronic
chr19:39849151(+) A-I      intronic
chr19:39858249(+) A-I      intronic
chr19:39849089(+) A-I      intronic
chr19:39855932(+) A-I      intronic
chr19:39857031(+) A-I      intronic
chr19:39858599(+) A-I      intronic
chr19:39849170(+) A-I      intronic
chr19:39858349(+) A-I      intronic
chr19:39856849(+) A-I      intronic
chr19:39856674(+) A-I      intronic
chr19:39858697(+) A-I      intronic
chr19:39858439(+) A-I      intronic
chr19:39858779(+) A-I      intronic
chr19:39845678(+) A-I      intronic
chr19:39858799(+) A-I      intronic
chr19:39848639(+) A-I      intronic
chr19:39865488(+) A-I      intronic
chr19:39852102(+) A-I      intronic
chr19:39849092(+) A-I      intronic
chr19:39856693(+) A-I      intronic
chr19:39848755(+) A-I      intronic
chr19:39856585(+) A-I      intronic
chr19:39858600(+) A-I      intronic
chr19:39856835(+) A-I      intronic
chr19:39849072(+) A-I      intronic
chr19:39849075(+) A-I      intronic
chr19:39869493(+) A-I      intronic
chr19:39849058(+) A-I      intronic
chr19:39858675(+) A-I      intronic
chr19:39852106(+) A-I      intronic
chr19:39856796(+) A-I      intronic
chr19:39848682(+) A-I      intronic
chr19:39858423(+) A-I      intronic
chr19:39858323(+) A-I      intronic
chr19:39857051(+) A-I      intronic
chr19:39849079(+) A-I      intronic
chr19:39858743(+) A-I      intronic
chr19:39848735(+) A-I      intronic
chr19:39858733(+) A-I      intronic
chr19:39870463(+) A-I      intronic
chr19:39848669(+) A-I      intronic
chr19:39858806(+) A-I      intronic
chr19:39858676(+) A-I      intronic
chr19:39849047(+) A-I      intronic
chr19:39849164(+) A-I      intronic
chr19:39855939(+) A-I      intronic
chr19:39848633(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SAMD4B
chr19:39849296(+) A-I intron -    21960545
chr19:39848656(+) A-G intron -    22484847
chr19:39848669(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SAMD4B
chr19:39838964-39838965(+) m6A 5'UTR//intron       24209618//24981863
chr19:39838989-39838990(+) m6A 5'UTR//intron       -
chr19:39847331-39847332(+) m6A 5'UTR       24209618//24981863
chr19:39847350-39847351(+) m6A 5'UTR//exon       24209618//24981863
chr19:39847356-39847357(+) m6A 5'UTR//exon       24209618//24981863
chr19:39847470-39847471(+) m6A 5'UTR//exon       -
chr19:39860513-39860514(+) m6A CDS//exon       24284625
chr19:39860672-39860673(+) m6A CDS//exon       24284625//24981863//22575960
chr19:39860694-39860695(+) m6A CDS//exon       24284625//24981863//22575960
chr19:39860759-39860760(+) m6A CDS//exon       24284625//24981863//26404942
chr19:39867403-39867404(+) m6A CDS//intron       -
chr19:39868143-39868144(+) m6A CDS//intron       24284625
chr19:39868270-39868271(+) m6A CDS//intron       24284625
chr19:39868317-39868318(+) m6A CDS//intron       24284625
chr19:39868338-39868339(+) m6A CDS//intron       24284625
chr19:39868356-39868357(+) m6A CDS//intron       24284625
chr19:39868428-39868429(+) m6A CDS//intron       22575960
chr19:39873989-39873990(+) m6A 3'UTR//intron       24284625
chr19:39874411-39874412(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863
chr19:39874420-39874421(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863
chr19:39874486-39874487(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960
chr19:39874520-39874521(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960
chr19:39874531-39874532(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960
chr19:39874567-39874568(+) m6A 3'UTR//intron       24284625//25456834//24981863//26404942//22575960
chr19:39874602-39874603(+) m6A 3'UTR//intron       25456834//24981863//26404942
chr19:39875221-39875222(+) m6A 3'UTR//intron       24981863
chr19:39875269-39875270(+) m6A 3'UTR//intron       24981863
chr19:39875341-39875342(+) m6A 3'UTR//intron       24981863
chr19:39875541-39875542(+) m6A 3'UTR//intron       27773535
chr19:39875550-39875551(+) m6A 3'UTR//intron       27773535
chr19:39875944-39875945(+) m6A exon//intron       -
chr19:39876030-39876031(+) m6A exon//intron       -
chr19:39876126-39876127(+) m6A exon//intron       24284625//24981863
chr19:39876263-39876264(+) m6A 3'UTR//exon       27773535
chr19:39876322-39876323(+) m6A 3'UTR//exon       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US25-2-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
SAMD4B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-5p
Interactor2: SAMD4B

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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