Detail Information

Basic Information:


  VIRBase ID:  

VHID00231385

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:           C1RL:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-5p C1RL
miRBase
Accession/Entrez ID		 MIMAT0001582 51279
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - C1r-LP//C1RL1//C1RLP//CLSPa

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C1RL
chr12:7247788(-) A-I      NonSyn:Gln->Arg
chr12:7247907(-) A-I      3'UTR
chr12:7247930(-) A-I      3'UTR
chr12:7247936(-) A-I      3'UTR
chr12:7247944(-) A-I      3'UTR
chr12:7247960(-) A-I      3'UTR
chr12:7247966(-) A-I      3'UTR
chr12:7250563(-) A-I      intronic
chr12:7249916(-) A-I      intronic
chr12:7249937(-) A-I      intronic
chr12:7249962(-) A-I      intronic
chr12:7247425(-) A-I      3'UTR
chr12:7249987(-) A-I      intronic
chr12:7250045(-) A-I      intronic
chr12:7250046(-) A-I      intronic
chr12:7250056(-) A-I      intronic
chr12:7250057(-) A-I      intronic
chr12:7250145(-) A-I      intronic
chr12:7251513(-) A-I      intronic
chr12:7249985(-) A-I      intronic
chr12:7251549(-) A-I      intronic
chr12:7251721(-) A-I      intronic
chr12:7251764(-) A-I      intronic
chr12:7247378(-) A-I      3'UTR
chr12:7247379(-) A-I      3'UTR
chr12:7247983(-) A-I      3'UTR
chr12:7247974(-) A-I      3'UTR
chr12:7247388(-) A-I      3'UTR
chr12:7247394(-) A-I      3'UTR
chr12:7247438(-) A-I      3'UTR
chr12:7247442(-) A-I      3'UTR
chr12:7247817(-) A-I      Syn:Glu->Glu
chr12:7247823(-) A-I      Syn:Ala->Ala
chr12:7247814(-) A-I      Syn:Ser->Ser
chr12:7247784(-) A-I      NonSyn:Stp->Trp
chr12:7247808(-) A-I      Syn:Glu->Glu
chr12:7250757(-) A-I      intronic
chr12:7250706(-) A-I      intronic
chr12:7250748(-) A-I      intronic
chr12:7250743(-) A-I      intronic
chr12:7250729(-) A-I      intronic
chr12:7250834(-) A-I      intronic
chr12:7250718(-) A-I      intronic
chr12:7250650(-) A-I      intronic
chr12:7250634(-) A-I      intronic
chr12:7250829(-) A-I      intronic
chr12:7250619(-) A-I      intronic
chr12:7249913(-) A-I      intronic
chr12:7250008(-) A-I      intronic
chr12:7250820(-) A-I      intronic
chr12:7249905(-) A-I      intronic
chr12:7250805(-) A-I      intronic
chr12:7250605(-) A-I      intronic
chr12:7250785(-) A-I      intronic
chr12:7250784(-) A-I      intronic
chr12:7250142(-) A-I      intronic
chr12:7250767(-) A-I      intronic
chr12:7251739(-) A-I      intronic
chr12:7250134(-) A-I      intronic
chr12:7250111(-) A-I      intronic
chr12:7250097(-) A-I      intronic
chr12:7250073(-) A-I      intronic
chr12:7250004(-) A-I      intronic
chr12:7250044(-) A-I      intronic
chr12:7250055(-) A-I      intronic
chr12:7250054(-) A-I      intronic
chr12:7254139(-) A-I      intronic
chr12:7254122(-) A-I      intronic
chr12:7251788(-) A-I      intronic
chr12:7254093(-) A-I      intronic
chr12:7254029(-) A-I      intronic
chr12:7253210(-) A-I      intronic
chr12:7253186(-) A-I      intronic
chr12:7253155(-) A-I      intronic
chr12:7251758(-) A-I      intronic
chr12:7251709(-) A-I      intronic
chr12:7251600(-) A-I      intronic
chr12:7251557(-) A-I      intronic
chr12:7251548(-) A-I      intronic
chr12:7251547(-) A-I      intronic
chr12:7250861(-) A-I      intronic
chr12:7251774(-) A-I      intronic
chr12:7250755(-) A-I      intronic
chr12:7250074(-) A-I      intronic
chr12:7259862(-) A-I      intronic
chr12:7250014(-) A-I      intronic
chr12:7250719(-) A-I      intronic
chr12:7250150(-) A-I      intronic
chr12:7249936(-) A-I      intronic
chr12:7250051(-) A-I      intronic
chr12:7254108(-) A-I      intronic
chr12:7251535(-) A-I      intronic
chr12:7250030(-) A-I      intronic
chr12:7250745(-) A-I      intronic
chr12:7260275(-) A-I      intronic
chr12:7253255(-) A-I      intronic
chr12:7247382(-) A-I      3'UTR
chr12:7247939(-) A-I      3'UTR
chr12:7247421(-) A-I      3'UTR
chr12:7247420(-) A-I      3'UTR
chr12:7247982(-) A-I      3'UTR
chr12:7247900(-) A-I      3'UTR
chr12:7247777(-) A-I      3'UTR
chr12:7247976(-) A-I      3'UTR
chr12:7247779(-) A-I      3'UTR
chr12:7247905(-) A-I      3'UTR
chr12:7247840(-) A-I      3'UTR
chr12:7247891(-) A-I      3'UTR
chr12:7247844(-) A-I      3'UTR
chr12:7247862(-) A-I      3'UTR
chr12:7247885(-) A-I      3'UTR
chr12:7247947(-) A-I      3'UTR
chr12:7247913(-) A-I      3'UTR
chr12:7247850(-) A-I      3'UTR
chr12:7247809(-) A-I      NonSyn:Glu->Gly
chr12:7251738(-) A-I      intronic
chr12:7250598(-) A-I      intronic
chr12:7253133(-) A-I      intronic
chr12:7250674(-) A-I      intronic
chr12:7250013(-) A-I      intronic
chr12:7251777(-) A-I      intronic
chr12:7250080(-) A-I      intronic
chr12:7251795(-) A-I      intronic
chr12:7253375(-) A-I      intronic
chr12:7253271(-) A-I      intronic
chr12:7250043(-) A-I      intronic
chr12:7250130(-) A-I      intronic
chr12:7249984(-) A-I      intronic
chr12:7250607(-) A-I      intronic
chr12:7259867(-) A-I      intronic
chr12:7253381(-) A-I      intronic
chr12:7249971(-) A-I      intronic
chr12:7250810(-) A-I      intronic
chr12:7254117(-) A-I      intronic
chr12:7250865(-) A-I      intronic
chr12:7249968(-) A-I      intronic
chr12:7249933(-) A-I      intronic
chr12:7250863(-) A-I      intronic
chr12:7249976(-) A-I      intronic
chr12:7250058(-) A-I      intronic
chr12:7250159(-) A-I      intronic
chr12:7253377(-) A-I      intronic
chr12:7254065(-) A-I      intronic
chr12:7250082(-) A-I      intronic
chr12:7260052(-) A-I      intronic
chr12:7250072(-) A-I      intronic
chr12:7250092(-) A-I      intronic
chr12:7250151(-) A-I      intronic
chr12:7250053(-) A-I      intronic
chr12:7249955(-) A-I      intronic
chr12:7249991(-) A-I      intronic
chr12:7251629(-) A-I      intronic
chr12:7250106(-) A-I      intronic
chr12:7250117(-) A-I      intronic
chr12:7250621(-) A-I      intronic
chr12:7249951(-) A-I      intronic
chr12:7251775(-) A-I      intronic
chr12:7250804(-) A-I      intronic
chr12:7249917(-) A-I      intronic
chr12:7250040(-) A-I      intronic
chr12:7250173(-) A-I      intronic
chr12:7249906(-) A-I      intronic
chr12:7247418(-) A-I      3'UTR
chr12:7247434(-) A-I      3'UTR
chr12:7247999(-) A-I      3'UTR
chr12:7247915(-) A-I      3'UTR
chr12:7247876(-) A-I      3'UTR
chr12:7247774(-) A-I      3'UTR
chr12:7247383(-) A-I      3'UTR
chr12:7247969(-) A-I      3'UTR
chr12:7247916(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C1RL
chr12:7249971(-) A-I intron -    21960545   //22327324
chr12:7249955(-) A-I intron -    21960545
chr12:7249968(-) A-I intron -    21960545
chr12:7250030(-) A-I intron -    21960545
chr12:7250074(-) A-I intron -    21960545
chr12:7250080(-) A-I intron -    21960545
chr12:7250082(-) A-I intron -    21960545
chr12:7250117(-) A-I intron -    21960545
chr12:7247434(-) A-G exon 3'UTR    22484847
chr12:7247915(-) A-G exon 3'UTR    22484847
chr12:7247916(-) A-G exon 3'UTR    22484847
chr12:7247969(-) A-G exon 3'UTR    22484847
chr12:7249933(-) A-G intron -    22484847
chr12:7249955(-) A-G intron -    22484847
chr12:7249971(-) A-G intron -    22484847
chr12:7250013(-) A-G intron -    22484847
chr12:7250014(-) A-G intron -    22484847
chr12:7250030(-) A-G intron -    22484847
chr12:7250082(-) A-G intron -    22484847
chr12:7247774(-) A-G exon 3'UTR    22484847
chr12:7247809(-) A-G exon 3'UTR    22484847
chr12:7247850(-) A-G exon 3'UTR    22484847
chr12:7247999(-) A-G exon 3'UTR    22484847
chr12:7250173(-) A-G intron -    22484847
chr12:7250607(-) A-G intron -    22484847
chr12:7251527(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C1RL
chr12:7244148-7244149(-) m6A 3'UTR       27773535
chr12:7244313-7244314(-) m6A intron       24981863
chr12:7245081-7245082(-) m6A 3'UTR       24981863
chr12:7245161-7245162(-) m6A intron       24981863
chr12:7245178-7245179(-) m6A intron       24981863
chr12:7245184-7245185(-) m6A intron       24981863
chr12:7245198-7245199(-) m6A intron       24981863
chr12:7246238-7246239(-) m6A 3'UTR       24981863
chr12:7246298-7246299(-) m6A 3'UTR       24981863
chr12:7247649-7247650(-) m6A 3'UTR//exon//intron       24981863//27773535
chr12:7247690-7247691(-) m6A 3'UTR//exon//intron       25456834//24981863//27773535
chr12:7247739-7247740(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7247749-7247750(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7247807-7247808(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7247904-7247905(-) m6A 3'UTR//intron       24981863
chr12:7248022-7248023(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr12:7248046-7248047(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr12:7248064-7248065(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr12:7248095-7248096(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr12:7248111-7248112(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr12:7248308-7248309(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr12:7248346-7248347(-) m6A 3'UTR//intron       24284625//24209618//27773535
chr12:7248369-7248370(-) m6A 3'UTR//intron       24284625//24209618//27773535
chr12:7248548-7248549(-) m6A 3'UTR//intron       27773535
chr12:7248559-7248560(-) m6A 3'UTR//intron       27773535
chr12:7248677-7248678(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr12:7248771-7248772(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7248792-7248793(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr12:7248823-7248824(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr12:7248911-7248912(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:7248916-7248917(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:7248965-7248966(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:7248971-7248972(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:7249020-7249021(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:7249119-7249120(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:7249146-7249147(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:7249217-7249218(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:7249223-7249224(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:7249357-7249358(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:7249434-7249435(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960
chr12:7249503-7249504(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//27371828
chr12:7249511-7249512(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//27371828
chr12:7249563-7249564(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7249584-7249585(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7249626-7249627(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr12:7250997-7250998(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535
chr12:7251005-7251006(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535
chr12:7252319-7252320(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//27371828
chr12:7252329-7252330(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//27371828
chr12:7252534-7252535(-) m6A 3'UTR//CDS//intron       24284625//27773535//27371828//27773536
chr12:7252555-7252556(-) m6A 3'UTR//CDS//intron       24284625//27773535//27371828//27773536
chr12:7252615-7252616(-) m6A CDS//intron       27773535//27773536
chr12:7254325-7254326(-) m6A 3'UTR//intron       27773535
chr12:7260814-7260815(-) m6A exon//intron       25456834//27371828//27773536
chr12:7260856-7260857(-) m6A CDS//exon//intron       24284625//25456834//27371828//27773536
chr12:7260868-7260869(-) m6A CDS//exon//intron       24284625//25456834//27371828//27773536
chr12:7260892-7260893(-) m6A CDS//exon//intron       24284625//25456834//27371828//27773536
chr12:7260937-7260938(-) m6A CDS//exon//intron       24284625//25456834//27371828//27773536
chr12:7261767-7261768(-) m6A CDS       24284625//24981863
chr12:7261858-7261859(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US25-2-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
C1RL
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-5p
Interactor2: C1RL

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...