Detail Information

Basic Information:


  VIRBase ID:  

VHID00231265

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:           PATZ1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-2-5p PATZ1
miRBase
Accession/Entrez ID		 MIMAT0001582 23598
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - dJ400N23//MAZR//PATZ//RIAZ//ZBTB19//ZNF278//ZSG

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PATZ1
chr22:31727974(-) A-I      intronic
chr22:31728010(-) A-I      intronic
chr22:31726394(-) A-I      intronic
chr22:31726406(-) A-I      intronic
chr22:31727968(-) A-I      intronic
chr22:31727934(-) A-I      intronic
chr22:31727886(-) A-I      intronic
chr22:31727885(-) A-I      intronic
chr22:31727619(-) A-I      intronic
chr22:31727562(-) A-I      intronic
chr22:31727557(-) A-I      intronic
chr22:31727533(-) A-I      intronic
chr22:31727532(-) A-I      intronic
chr22:31727530(-) A-I      intronic
chr22:31727486(-) A-I      intronic
chr22:31727398(-) A-I      intronic
chr22:31726433(-) A-I      intronic
chr22:31727984(-) A-I      intronic
chr22:31728037(-) A-I      intronic
chr22:31728071(-) A-I      intronic
chr22:31728014(-) A-I      intronic
chr22:31727490(-) A-I      intronic
chr22:31727988(-) A-I      intronic
chr22:31727464(-) A-I      intronic
chr22:31728045(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PATZ1
chr22:31722515-31722516(-) m6A 3'UTR       24981863//27773535
chr22:31722837-31722838(-) m6A 3'UTR       25456834//24981863//27371828
chr22:31722851-31722852(-) m6A 3'UTR       25456834//24981863//27371828
chr22:31722985-31722986(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828
chr22:31723027-31723028(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr22:31723074-31723075(-) m6A 3'UTR//CDS       24981863//27773535
chr22:31723078-31723079(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//22608085
chr22:31723156-31723157(-) m6A 3'UTR//CDS       25456834//24981863//27371828//22608085
chr22:31724787-31724788(-) m6A CDS//intron       27371828
chr22:31731733-31731734(-) m6A CDS//exon       24284625//27773535
chr22:31731787-31731788(-) m6A CDS//exon       24284625//27773535
chr22:31731820-31731821(-) m6A CDS//exon       24284625//27773535
chr22:31736694-31736695(-) m6A 3'UTR//exon//intron       24284625
chr22:31736708-31736709(-) m6A 3'UTR//exon//intron       24284625
chr22:31737508-31737509(-) m6A CDS//exon//intron       24284625
chr22:31737601-31737602(-) m6A CDS//exon//intron       24284625//27773535
chr22:31737630-31737631(-) m6A CDS//exon//intron       24284625
chr22:31738927-31738928(-) m6A CDS//exon       24284625
chr22:31740537-31740538(-) m6A CDS       24284625//27371828
chr22:31740566-31740567(-) m6A CDS       24284625//27371828
chr22:31740758-31740759(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:31740868-31740869(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:31740890-31740891(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:31741025-31741026(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:31741043-31741044(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:31741050-31741051(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr22:31741117-31741118(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr22:31741183-31741184(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr22:31741232-31741233(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:31741241-31741242(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:31741496-31741497(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr22:31741525-31741526(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr22:31741678-31741679(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr22:31741716-31741717(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr22:31741763-31741764(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr22:31741863-31741864(-) m6A 5'UTR       24284625//25456834//24981863//27773536//22608085
chr22:31742000-31742001(-) m6A 5'UTR       24209618//27773536
chr22:31742173-31742174(-) m6A 5'UTR       24209618//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US25-2-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
PATZ1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-2-5p
Interactor2: PATZ1

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid
Support Database RepTar//VmiReg

Starting a new search, please wait ...