Basic Information:

  VIRBase ID:  

VHID00231088

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:  MIMAT0001582          TSHZ1:  NM_001308210     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-5p	TSHZ1
miRBase Accession/Entrez ID	MIMAT0001582	10194
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CAA//NY-CO-33//SDCCAG33//TSH1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSHZ1	chr18:72949370(+) A-I      intronic chr18:72949392(+) A-I      intronic chr18:72949208(+) A-I      intronic chr18:72949219(+) A-I      intronic chr18:72949947(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSHZ1	chr18:72923788-72923789(+) m6A 5'UTR//intron       24284625 chr18:72997477-72997478(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//22608085 chr18:72997543-72997544(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72997693-72997694(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72997726-72997727(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72998056-72998057(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr18:72998110-72998111(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:72998141-72998142(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:72998163-72998164(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:72998191-72998192(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:72998197-72998198(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:72998208-72998209(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:72998300-72998301(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72998323-72998324(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72998346-72998347(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72998399-72998400(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72998434-72998435(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72998521-72998522(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72998734-72998735(+) m6A CDS//exon       24284625//24981863 chr18:72998926-72998927(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72998980-72998981(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999010-72999011(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999332-72999333(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999428-72999429(+) m6A CDS//exon       24284625//25456834//24981863//27371828//22608085 chr18:72999456-72999457(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72999479-72999480(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72999565-72999566(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:72999622-72999623(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999667-72999668(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999709-72999710(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999775-72999776(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999811-72999812(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999877-72999878(+) m6A CDS//exon       24284625//24981863//22608085 chr18:72999898-72999899(+) m6A CDS//exon       24284625//24981863//22608085 chr18:73000039-73000040(+) m6A CDS//exon       24284625//24981863//22608085 chr18:73000092-73000093(+) m6A CDS//exon       24284625//24981863//22608085 chr18:73000120-73000121(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:73000221-73000222(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr18:73000246-73000247(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr18:73000252-73000253(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr18:73000302-73000303(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:73000332-73000333(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr18:73000351-73000352(+) Y CDS//exon       26075521 chr18:73000391-73000392(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr18:73000425-73000426(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr18:73000456-73000457(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000494-73000495(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000520-73000521(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000536-73000537(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000558-73000559(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000589-73000590(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000614-73000615(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr18:73000622-73000623(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr18:73000710-73000711(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73000874-73000875(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73000897-73000898(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73000920-73000921(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73000964-73000965(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73000995-73000996(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001088-73001089(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001095-73001096(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001134-73001135(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001150-73001151(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001189-73001190(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001196-73001197(+) Gm 3'UTR//exon       - chr18:73001228-73001229(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001235-73001236(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001273-73001274(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001639-73001640(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001690-73001691(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001736-73001737(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001744-73001745(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr18:73001764-73001765(+) m6A 3'UTR//exon       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US25-2-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	TSHZ1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-5p
Interactor2: TSHZ1

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg