Basic Information:

  VIRBase ID:  

VHID00230483

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-2-5p:  MIMAT0001582          CDH5:  NM_001795     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-2-5p	CDH5
miRBase Accession/Entrez ID	MIMAT0001582	1003
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	7B4//CD144

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDH5	chr16:66418387(+) A-I      intronic chr16:66418427(+) A-I      intronic chr16:66418178(+) A-I      intronic chr16:66418171(+) A-I      intronic chr16:66418474(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDH5	chr16:66400615-66400616(+) m6A 5'UTR       - chr16:66400632-66400633(+) m6A 5'UTR       - chr16:66400638-66400639(+) m6A 5'UTR       - chr16:66426132-66426133(+) m6A 3'UTR//CDS       - chr16:66426219-66426220(+) m6A 3'UTR//CDS//intron       - chr16:66426258-66426259(+) m6A 3'UTR//CDS//intron       - chr16:66426319-66426320(+) m6A 3'UTR//intron       - chr16:66426364-66426365(+) m6A 3'UTR//intron       - chr16:66426378-66426379(+) m6A 3'UTR//intron       - chr16:66426421-66426422(+) m6A 3'UTR//intron       - chr16:66429662-66429663(+) m6A 5'UTR//intron       - chr16:66429977-66429978(+) m6A 3'UTR//5'UTR//CDS//intron       - chr16:66430020-66430021(+) m6A 3'UTR//5'UTR//CDS//intron       - chr16:66430039-66430040(+) m6A 3'UTR//5'UTR//CDS//intron       - chr16:66430044-66430045(+) m6A 3'UTR//5'UTR//CDS//intron       - chr16:66436866-66436867(+) m6A 3'UTR//CDS       - chr16:66437008-66437009(+) m6A 3'UTR//CDS       - chr16:66437046-66437047(+) m6A 3'UTR//CDS       - chr16:66437099-66437100(+) m6A 3'UTR       - chr16:66437105-66437106(+) m6A 3'UTR       - chr16:66437203-66437204(+) m6A 3'UTR       - chr16:66437227-66437228(+) m6A 3'UTR       - chr16:66437319-66437320(+) m6A 3'UTR       - chr16:66437346-66437347(+) m6A 3'UTR       - chr16:66437365-66437366(+) m6A 3'UTR       - chr16:66437398-66437399(+) m6A 3'UTR       - chr16:66437502-66437503(+) m6A 3'UTR       - chr16:66437551-66437552(+) m6A 3'UTR       - chr16:66437748-66437749(+) m6A 3'UTR       - chr16:66437775-66437776(+) m6A 3'UTR       - chr16:66437892-66437893(+) m6A 3'UTR       - chr16:66437905-66437906(+) m6A 3'UTR       - chr16:66438049-66438050(+) m6A 3'UTR       - chr16:66438073-66438074(+) m6A 3'UTR       - chr16:66438078-66438079(+) m6A 3'UTR       - chr16:66438089-66438090(+) m6A 3'UTR       - chr16:66438159-66438160(+) m6A 3'UTR       - chr16:66438254-66438255(+) m6A 3'UTR       - chr16:66438304-66438305(+) m6A 3'UTR       - chr16:66438329-66438330(+) m6A 3'UTR       - chr16:66438468-66438469(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US25-2-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	CDH5	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-2-5p
Interactor2: CDH5

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg