Basic Information:

  VIRBase ID:  

VHID00229767

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-2-3p:  MIMAT0001580          HSDL1:  NM_031463     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US5-2-3p	HSDL1
miRBase Accession/Entrez ID	MIMAT0001580	83693
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SDR12C3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HSDL1	chr16:84162375(-) A-I      intronic chr16:84156203(-) A-I      3'UTR chr16:84156229(-) A-I      3'UTR chr16:84156184(-) A-I      3'UTR chr16:84156236(-) A-I      3'UTR chr16:84165567(-) A-I      intronic chr16:84162381(-) A-I      intronic chr16:84161025(-) A-I      intronic chr16:84161750(-) A-I      intronic chr16:84160913(-) A-I      intronic chr16:84162495(-) A-I      intronic chr16:84165558(-) A-I      intronic chr16:84168045(-) A-I      intronic chr16:84168055(-) A-I      intronic chr16:84168674(-) A-I      intronic chr16:84168134(-) A-I      intronic chr16:84162473(-) A-I      intronic chr16:84168645(-) A-I      intronic chr16:84168665(-) A-I      intronic chr16:84162490(-) A-I      intronic chr16:84160844(-) A-I      intronic chr16:84160959(-) A-I      intronic chr16:84165565(-) A-I      intronic chr16:84159586(-) A-I      intronic chr16:84160893(-) A-I      intronic chr16:84167251(-) A-I      intronic chr16:84162355(-) A-I      intronic chr16:84162736(-) A-I      intronic chr16:84168036(-) A-I      intronic chr16:84162743(-) A-I      intronic chr16:84162585(-) A-I      intronic chr16:84162342(-) A-I      intronic chr16:84168203(-) A-I      intronic chr16:84162380(-) A-I      intronic chr16:84176130(-) A-I      intronic chr16:84165187(-) A-I      intronic chr16:84162731(-) A-I      intronic chr16:84156039(-) A-I      3'UTR chr16:84161633(-) A-I      intronic chr16:84161772(-) A-I      intronic chr16:84161886(-) A-I      intronic chr16:84177557(-) A-I      intronic chr16:84161782(-) A-I      intronic chr16:84168204(-) A-I      intronic chr16:84177496(-) A-I      intronic chr16:84162441(-) A-I      intronic chr16:84162467(-) A-I      intronic chr16:84160984(-) A-I      intronic chr16:84159645(-) A-I      intronic chr16:84161093(-) A-I      intronic chr16:84162492(-) A-I      intronic chr16:84162819(-) A-I      intronic chr16:84177405(-) A-I      intronic chr16:84162805(-) A-I      intronic chr16:84161731(-) A-I      intronic chr16:84159519(-) A-I      intronic chr16:84161024(-) A-I      intronic chr16:84162451(-) A-I      intronic chr16:84168135(-) A-I      intronic chr16:84165186(-) A-I      intronic chr16:84160885(-) A-I      intronic chr16:84162477(-) A-I      intronic chr16:84177584(-) A-I      intronic chr16:84161855(-) A-I      intronic chr16:84159596(-) A-I      intronic chr16:84162797(-) A-I      intronic chr16:84167277(-) A-I      intronic chr16:84168625(-) A-I      intronic chr16:84160917(-) A-I      intronic chr16:84161837(-) A-I      intronic chr16:84160988(-) A-I      intronic chr16:84162506(-) A-I      intronic chr16:84168594(-) A-I      intronic chr16:84174034(-) A-I      intronic chr16:84161649(-) A-I      intronic chr16:84167083(-) A-I      intronic chr16:84167152(-) A-I      intronic chr16:84176108(-) A-I      intronic chr16:84160998(-) A-I      intronic chr16:84167248(-) A-I      intronic chr16:84167971(-) A-I      intronic chr16:84168065(-) A-I      intronic chr16:84162491(-) A-I      intronic chr16:84160989(-) A-I      intronic chr16:84168775(-) A-I      intronic chr16:84165513(-) A-I      intronic chr16:84165258(-) A-I      intronic chr16:84162396(-) A-I      intronic chr16:84161636(-) A-I      intronic chr16:84167271(-) A-I      intronic chr16:84161825(-) A-I      intronic chr16:84156208(-) A-I      3'UTR chr16:84156127(-) A-I      3'UTR chr16:84156101(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HSDL1	chr16:84156296-84156297(-) m6A 3'UTR//exon       27773535 chr16:84156366-84156367(-) m6A 3'UTR//exon       27773535 chr16:84156431-84156432(-) m6A 3'UTR//exon       24284625//27773535 chr16:84156441-84156442(-) m6A 3'UTR//exon       27773535 chr16:84156459-84156460(-) m6A 3'UTR//exon//intron       27773535 chr16:84156484-84156485(-) m6A 3'UTR//exon//intron       27773535 chr16:84156625-84156626(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr16:84156725-84156726(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr16:84156834-84156835(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr16:84156854-84156855(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085 chr16:84156900-84156901(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085 chr16:84156916-84156917(-) Y 3'UTR//exon       26075521 chr16:84157003-84157004(-) m6A 3'UTR//exon       24284625//27773535//22608085 chr16:84157026-84157027(-) m6A 3'UTR//exon       24284625//22608085 chr16:84157077-84157078(-) m6A 3'UTR//exon       24284625//22608085 chr16:84157104-84157105(-) m6A 3'UTR//exon       24284625 chr16:84158066-84158067(-) m6A 3'UTR//exon       24981863//22608085 chr16:84158098-84158099(-) m6A 3'UTR//exon       24284625//24981863//22608085 chr16:84158167-84158168(-) m6A 3'UTR//exon       24284625//24981863//22608085 chr16:84158193-84158194(-) m6A 3'UTR//exon       24981863//22608085 chr16:84158280-84158281(-) Y CDS       26075521 chr16:84163726-84163727(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:84163741-84163742(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:84163753-84163754(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:84163831-84163832(-) m6A CDS//intron       24284625//24209618//24981863//27371828//22608085 chr16:84163882-84163883(-) m6A CDS//intron       24284625//24209618//24981863//27371828//22608085 chr16:84163901-84163902(-) m6A CDS//intron       24284625//24209618//24981863//27371828//22608085 chr16:84163927-84163928(-) m6A CDS//intron       24209618//24981863//22608085 chr16:84164593-84164594(-) m6A exon//intron       24209618 chr16:84164614-84164615(-) m6A exon//intron       24209618 chr16:84169162-84169163(-) m6A 5'UTR//exon       24284625//24209618//25456834//27371828//27773536 chr16:84172892-84172893(-) m6A 5'UTR//intron       24284625//24209618//25456834//27371828//27773536 chr16:84177930-84177931(-) m6A 5'UTR//intron       - chr16:84177935-84177936(-) m6A 5'UTR//intron       - chr16:84178026-84178027(-) m6A 5'UTR//intron       24981863 chr16:84178700-84178701(-) m6A 5'UTR//exon       24981863 chr16:84178713-84178714(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HSDL1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US5-2-3p
Interactor2: HSDL1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg