Detail Information

Basic Information:


  VIRBase ID:  

VHID00229677

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-2-3p:           LRRC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US5-2-3p LRRC2
miRBase
Accession/Entrez ID		 MIMAT0001580 79442
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRC2
chr3:46567607(-) A-I      intronic
chr3:46564184(-) A-I      intronic
chr3:46593471(-) A-I      intronic
chr3:46570429(-) A-I      intronic
chr3:46569885(-) A-I      intronic
chr3:46569310(-) A-I      intronic
chr3:46569255(-) A-I      intronic
chr3:46557456(-) A-I      3'UTR
chr3:46560089(-) A-I      3'UTR
chr3:46560131(-) A-I      3'UTR
chr3:46560031(-) A-I      3'UTR
chr3:46559914(-) A-I      3'UTR
chr3:46559948(-) A-I      3'UTR
chr3:46559962(-) A-I      3'UTR
chr3:46557445(-) A-I      3'UTR
chr3:46559975(-) A-I      3'UTR
chr3:46560015(-) A-I      3'UTR
chr3:46557448(-) A-I      3'UTR
chr3:46560045(-) A-I      3'UTR
chr3:46557450(-) A-I      3'UTR
chr3:46557452(-) A-I      3'UTR
chr3:46557454(-) A-I      3'UTR
chr3:46564151(-) A-I      intronic
chr3:46570822(-) A-I      intronic
chr3:46596075(-) A-I      intronic
chr3:46570495(-) A-I      intronic
chr3:46570414(-) A-I      intronic
chr3:46571987(-) A-I      intronic
chr3:46566879(-) A-I      intronic
chr3:46566923(-) A-I      intronic
chr3:46570845(-) A-I      intronic
chr3:46604354(-) A-I      intronic
chr3:46572007(-) A-I      intronic
chr3:46573850(-) A-I      intronic
chr3:46570417(-) A-I      intronic
chr3:46569871(-) A-I      intronic
chr3:46557611(-) A-I      3'UTR
chr3:46557588(-) A-I      3'UTR
chr3:46557721(-) A-I      3'UTR
chr3:46557647(-) A-I      3'UTR
chr3:46560034(-) A-I      3'UTR
chr3:46567518(-) A-I      intronic
chr3:46569360(-) A-I      intronic
chr3:46567644(-) A-I      intronic
chr3:46570485(-) A-I      intronic
chr3:46570524(-) A-I      intronic
chr3:46596070(-) A-I      intronic
chr3:46566919(-) A-I      intronic
chr3:46570810(-) A-I      intronic
chr3:46569414(-) A-I      intronic
chr3:46570380(-) A-I      intronic
chr3:46567606(-) A-I      intronic
chr3:46597733(-) A-I      intronic
chr3:46569315(-) A-I      intronic
chr3:46567638(-) A-I      intronic
chr3:46569432(-) A-I      intronic
chr3:46566852(-) A-I      intronic
chr3:46597723(-) A-I      intronic
chr3:46569437(-) A-I      intronic
chr3:46569492(-) A-I      intronic
chr3:46570566(-) A-I      intronic
chr3:46566920(-) A-I      intronic
chr3:46570357(-) A-I      intronic
chr3:46569320(-) A-I      intronic
chr3:46569350(-) A-I      intronic
chr3:46566944(-) A-I      intronic
chr3:46569491(-) A-I      intronic
chr3:46570589(-) A-I      intronic
chr3:46598339(-) A-I      intronic
chr3:46596069(-) A-I      intronic
chr3:46569326(-) A-I      intronic
chr3:46570520(-) A-I      intronic
chr3:46570823(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRC2
chr3:46560325-46560326(-) m6A 3'UTR       27773535
chr3:46563025-46563026(-) m6A CDS       27773535
chr3:46586556-46586557(-) m6A CDS       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LRRC2
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US5-2-3p
Interactor2: LRRC2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...