Detail Information

Basic Information:


  VIRBase ID:  

VHID00228837

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-2-3p:           SKAP2:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US5-2-3p SKAP2
miRBase
Accession/Entrez ID		 MIMAT0001580 8935
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - PRAP//RA70//SAPS//SCAP2//SKAP-HOM//SKAP55R

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SKAP2
chr7:26790098(-) A-I      intronic
chr7:26793864(-) A-I      intronic
chr7:26797653(-) A-I      intronic
chr7:26797669(-) A-I      intronic
chr7:26822306(-) A-I      intronic
chr7:26841987(-) A-I      intronic
chr7:26842002(-) A-I      intronic
chr7:26842006(-) A-I      intronic
chr7:26842019(-) A-I      intronic
chr7:26842029(-) A-I      intronic
chr7:26842157(-) A-I      intronic
chr7:26842163(-) A-I      intronic
chr7:26842418(-) A-I      intronic
chr7:26844186(-) A-I      intronic
chr7:26844192(-) A-I      intronic
chr7:26780933(-) A-I      intronic
chr7:26845954(-) A-I      intronic
chr7:26758581(-) A-I      intronic
chr7:26758580(-) A-I      intronic
chr7:26841988(-) A-I      intronic
chr7:26758593(-) A-I      intronic
chr7:26758687(-) A-I      intronic
chr7:26780901(-) A-I      intronic
chr7:26789961(-) A-I      intronic
chr7:26753447(-) A-I      intronic
chr7:26753444(-) A-I      intronic
chr7:26753419(-) A-I      intronic
chr7:26753357(-) A-I      intronic
chr7:26741809(-) A-I      intronic
chr7:26741093(-) A-I      intronic
chr7:26720908(-) A-I      intronic
chr7:26720905(-) A-I      intronic
chr7:26849894(-) A-I      intronic
chr7:26742016(-) A-I      intronic
chr7:26780432(-) A-I      intronic
chr7:26780956(-) A-I      intronic
chr7:26790027(-) A-I      intronic
chr7:26790081(-) A-I      intronic
chr7:26790086(-) A-I      intronic
chr7:26720987(-) A-I      intronic
chr7:26842417(-) A-I      intronic
chr7:26741859(-) A-I      intronic
chr7:26842378(-) A-I      intronic
chr7:26848950(-) A-I      intronic
chr7:26785409(-) A-I      intronic
chr7:26758632(-) A-I      intronic
chr7:26850527(-) A-I      intronic
chr7:26720976(-) A-I      intronic
chr7:26741292(-) A-I      intronic
chr7:26708361(-) A-I      3'UTR
chr7:26708370(-) A-I      3'UTR
chr7:26841996(-) A-I      intronic
chr7:26850397(-) A-I      intronic
chr7:26793920(-) A-I      intronic
chr7:26789150(-) A-I      intronic
chr7:26758677(-) A-I      intronic
chr7:26757375(-) A-I      intronic
chr7:26789251(-) A-I      intronic
chr7:26741915(-) A-I      intronic
chr7:26789133(-) A-I      intronic
chr7:26780948(-) A-I      intronic
chr7:26785207(-) A-I      intronic
chr7:26758629(-) A-I      intronic
chr7:26757007(-) A-I      intronic
chr7:26822234(-) A-I      intronic
chr7:26741258(-) A-I      intronic
chr7:26822279(-) A-I      intronic
chr7:26741931(-) A-I      intronic
chr7:26842469(-) A-I      intronic
chr7:26741095(-) A-I      intronic
chr7:26720980(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SKAP2
chr7:26708301(-) G-A exon 3'UTR    22484847
chr7:26721004(-) C-T intron -    22484847
chr7:26741292(-) A-G intron -    22484847
chr7:26758629(-) A-G intron -    22484847
chr7:26758632(-) A-G intron -    22484847
chr7:26758788(-) A-G intron -    22484847
chr7:26772643(-) T-C intron -    22484847
chr7:26785409(-) A-G intron -    22484847
chr7:26789133(-) A-G intron -    22484847
chr7:26789150(-) A-G intron -    22484847
chr7:26789251(-) A-G intron -    22484847
chr7:26822234(-) A-G intron -    22484847
chr7:26822258(-) A-G intron -    22484847
chr7:26822279(-) A-G intron -    22484847
chr7:26842417(-) A-G intron -    22484847
chr7:26842485(-) A-G intron -    22484847
chr7:26842489(-) A-G intron -    22484847
chr7:26850397(-) A-G intron -    22484847
chr7:26850527(-) A-G intron -    22484847
chr7:26850528(-) A-G intron -    22484847
chr7:26850572(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SKAP2
chr7:26708311-26708312(-) m6A 3'UTR       24981863
chr7:26708380-26708381(-) m6A 3'UTR       24981863
chr7:26883704-26883705(-) m6A CDS//exon       27773535
chr7:26887659-26887660(-) m6A exon//intron       27773535
chr7:26893760-26893761(-) m6A CDS//exon       27773535
chr7:26903992-26903993(-) m6A CDS//exon//intron       24284625//24981863
chr7:26904577-26904578(-) m6A exon//intron       24981863//27773535
chr7:26904609-26904610(-) m6A exon//intron       24981863//27773535
chr7:26904620-26904621(-) m6A exon//intron       24981863//27773535
chr7:26904646-26904647(-) m6A exon//intron       24981863//27773535
chr7:26904671-26904672(-) m6A exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SKAP2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US5-2-3p
Interactor2: SKAP2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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