Basic Information:

  VIRBase ID:  

VHID00228764

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-2-3p:  MIMAT0001580          ZKSCAN8:  NM_001278121     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US5-2-3p	ZKSCAN8
miRBase Accession/Entrez ID	MIMAT0001580	7745
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LD5-1//ZNF192//ZSCAN40

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZKSCAN8	chr6:28110002-28110003(+) m6A 5'UTR//intron       24284625 chr6:28112199-28112200(+) m6A 5'UTR//intron       24981863 chr6:28116161-28116162(+) m6A 5'UTR       24284625//24981863//22608085 chr6:28116228-28116229(+) m6A CDS       24284625//24981863//22608085 chr6:28116233-28116234(+) m6A CDS       24284625//24981863//22608085 chr6:28116285-28116286(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:28116368-28116369(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:28116376-28116377(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:28116438-28116439(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:28116448-28116449(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:28116509-28116510(+) m6A CDS       24209618//24981863//22608085 chr6:28116523-28116524(+) m6A CDS       24981863//22608085 chr6:28120057-28120058(+) m6A 3'UTR//CDS       24981863 chr6:28120147-28120148(+) m6A 3'UTR//CDS       24981863//22608085 chr6:28120841-28120842(+) m6A 3'UTR//CDS       24981863//22608085 chr6:28120854-28120855(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr6:28120873-28120874(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr6:28120910-28120911(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr6:28120968-28120969(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:28121101-28121102(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:28121226-28121227(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085 chr6:28121353-28121354(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:28121410-28121411(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:28121465-28121466(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:28121521-28121522(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:28121578-28121579(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:28121605-28121606(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:28121646-28121647(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:28124828-28124829(+) m6A 3'UTR       - chr6:28124873-28124874(+) m6A 3'UTR       - chr6:28124971-28124972(+) m6A 3'UTR       - chr6:28124985-28124986(+) m6A 3'UTR       - chr6:28124997-28124998(+) m6A 3'UTR       - chr6:28125015-28125016(+) m6A 3'UTR       - chr6:28125035-28125036(+) m6A 3'UTR       - chr6:28126804-28126805(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZKSCAN8	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US5-2-3p
Interactor2: ZKSCAN8

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg